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Tutorial
Mathematics of Proteins
Date Title / Speaker
January 10, 2008 Lecture 1: Fundamental forces and molecular architecture
Michael Levitt (Stanford University)
Tutorial
Annual Program Workshop
RNA in Biology, Bioengineering and Nanotechnology
Date Title / Speaker
November 02, 2007 Concluding remarks
Tamar Schlick (New York University), Eric Westhof (Université de Strasbourg I (Louis Pasteur))
Annual Program Workshop
November 02, 2007 RNA Tertiary Structure as a Proto-language for Nano-construction
Luc Jaeger (University of California)
Annual Program Workshop
November 02, 2007 Computational Approaches to RNA Nanodesign
Bruce Shapiro (National Cancer Institute)
Annual Program Workshop
November 01, 2007 RNA / RNP Synthetic Biology
Tan Inoue (Kyoto University)
Annual Program Workshop
November 01, 2007 Exploring the Energy Landscape of RNA
Devarajan Thirumalai (University of Maryland)
Annual Program Workshop
November 01, 2007 A Topological Classification of RNA Folds
Henri Orland (Commissariat à l'Énergie Atomique (CEA))
Annual Program Workshop
November 01, 2007 Structure, Dynamics and Catalytic Mechanisms of Two Ribozymes
David Lilley (University of Dundee)
Annual Program Workshop
November 01, 2007 How RNA Tells Right from Wrong: Base Pairs, Tertiary Interactions, and Counterions in RNA Folding
Sarah Woodson (Johns Hopkins University)
Annual Program Workshop
October 31, 2007 Architecture and Reactivity of RNA
Eric Westhof (Université de Strasbourg I (Louis Pasteur))
Annual Program Workshop
October 31, 2007 Ultraconserved Nonsense: Pervasive Unproductive Splicing of SR Proteins

Associated with Exceptionally Conserved DNA Elements -- A Bizarre Prevalent Mode of Gene Regulation

Steven Brenner (University of California, Berkeley)
Annual Program Workshop
October 31, 2007 Feynman Diagrams, RNA Folding, and the Transition Polynomial
Yongwu Rong (George Washington University)
Annual Program Workshop
October 31, 2007 Using RNA 3D Structure Data in SCFG/MRF Models to do Sequence Alignment and Motif Inference
Craig Zirbel (Bowling Green State University)
Annual Program Workshop
October 31, 2007 Structure-neutral RNA Substitutions from 3D Structure Alignments and 3D Motif Search
Neocles Leontis (Bowling Green State University)
Annual Program Workshop
October 30, 2007 Designing Structured RNA Pools for RNA inVitro Selection
Hin Gan (New York University), Namhee Kim (New York University), Tamar Schlick (New York University)
Annual Program Workshop
October 30, 2007 Locomotif: From Graphical Motif Description to RNA Motif Search
Jens Reeder (Universität Bielefeld)
Annual Program Workshop
October 30, 2007 Genomic Identification of Structural RNAs using phylo-SCFGs
Jakob Pedersen (University of Copenhagen)
Annual Program Workshop
October 30, 2007 Prediction of RNA-RNA Interactions
Ivo Hofacker (Universität Wien)
Annual Program Workshop
October 30, 2007 Imaging RNA Structures and Folding Intermediates using Electron Cryo-Microscopy
Tobin Sosnick (University of Chicago)
Annual Program Workshop
October 30, 2007 ARTS and DARTS: A Method and Database for Exploring RNA Tertiary Structures
Ruth Nussinov (National Cancer Institute)
Annual Program Workshop
October 30, 2007 Analysis, Prediction, and Design of Viral RNA Secondary Structures
Christine Heitsch (Georgia Institute of Technology)
Annual Program Workshop
October 29, 2007 RNA Folding During Transcriptions Facilitated by Non-native Structures
Tao Pan (University of Chicago)
Annual Program Workshop
October 29, 2007 RNA Matrices and RNA Secondary Structures
Asamoah Nkwanta (Morgan State University)
Annual Program Workshop
October 29, 2007 A Continuous Probabilistic Model of Local RNA 3-D Structure
Jes Frellsen (University of Copenhagen)
Annual Program Workshop
October 29, 2007 Analysis and Design of Nucleic Acid Devices
Niles Pierce (California Institute of Technology)
Annual Program Workshop
October 29, 2007 Prediction of the Secondary Structure Common to Two Sequences: Free Energy Minimization and Comparative Analysis
David Mathews (University of Rochester)
Annual Program Workshop
October 29, 2007 Computational Methods for RNA Secondary Structure Determination
Michael Zuker (Rensselaer Polytechnic Institute)
Annual Program Workshop
October 29, 2007 Introduction
Tamar Schlick (New York University), Eric Westhof (Université de Strasbourg I (Louis Pasteur))
Annual Program Workshop
Mathematics of DNA Structure, Function, and Interactions
Date Title / Speaker
September 21, 2007 The Mathematics of Site-specific Recombination: 1. Difference Topology

Experiments and the Mu Tranpososome; 2. DNA Unlinking by XerCD/FtsK

Mariel Vazquez (San Francisco State University)
Annual Program Workshop
Public Lecture
Algebra, Statistics, Computation, and Biology
Date Title / Speaker
October 09, 2007 Algebra, Statistics, Computation, and Biology
Bernd Sturmfels (University of California, Berkeley)
Public Lecture

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