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IMA Video Library

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Annual Program Workshop
RNA in Biology, Bioengineering and Nanotechnology
Date Title / Speaker
October 30, 2007 Analysis, Prediction, and Design of Viral RNA Secondary Structures
Christine Heitsch (Georgia Institute of Technology)
Annual Program Workshop
October 29, 2007 RNA Folding During Transcriptions Facilitated by Non-native Structures
Tao Pan (University of Chicago)
Annual Program Workshop
October 29, 2007 RNA Matrices and RNA Secondary Structures
Asamoah Nkwanta (Morgan State University)
Annual Program Workshop
October 29, 2007 A Continuous Probabilistic Model of Local RNA 3-D Structure
Jes Frellsen (University of Copenhagen)
Annual Program Workshop
October 29, 2007 Analysis and Design of Nucleic Acid Devices
Niles Pierce (California Institute of Technology)
Annual Program Workshop
October 29, 2007 Prediction of the Secondary Structure Common to Two Sequences: Free Energy Minimization and Comparative Analysis
David Mathews (University of Rochester)
Annual Program Workshop
October 29, 2007 Computational Methods for RNA Secondary Structure Determination
Michael Zuker (Rensselaer Polytechnic Institute)
Annual Program Workshop
October 29, 2007 Introduction
Tamar Schlick (New York University), Eric Westhof (Université de Strasbourg I (Louis Pasteur))
Annual Program Workshop
Mathematics of DNA Structure, Function, and Interactions
Date Title / Speaker
September 21, 2007 The Mathematics of Site-specific Recombination: 1. Difference Topology

Experiments and the Mu Tranpososome; 2. DNA Unlinking by XerCD/FtsK

Mariel Vazquez (San Francisco State University)
Annual Program Workshop
September 21, 2007 Difference Topology: Analysis of DNA Architecture in Complex DNA-protein Assemblies
Makkuni Jayaram (The University of Texas at Austin)
Annual Program Workshop
September 20, 2007 Exploring Salt-mediated Electrostatics in the Association of TATA Binding Proteins to DNA with a Combined Molecular Mechanics/Poisson-Boltzmann Approach
Marcia Fenley (Florida State University)
Annual Program Workshop
September 20, 2007 Mathematical Methods to Study the Relative Position of Chromosomes During Interphase in Human Cells
F. Javier Arsuaga (San Francisco State University)
Annual Program Workshop
September 20, 2007 Approaches to Understanding the Origin and Management of DNA Stiffness
James Maher (Mayo Clinic)
Annual Program Workshop
September 20, 2007 Design, Analysis, and Modeling of Protein-DNA Loops
Jason Kahn (University of Maryland)
Annual Program Workshop
September 20, 2007 Lysogeny Maintenance: A Matter of Looping
Laura Finzi (Emory University)
Annual Program Workshop
September 20, 2007 Chromatin Compaction as a Topological Problem
Andrew Travers (MRC Laboratory of Molecular Biology)
Annual Program Workshop
September 19, 2007 Nucleosome and Chromatin Structure and Dynamics Studied by Fluorescence Techniques and Computer Modeling
Jörg Langowski (Deutsches Krebsforschungszentrum (Cancer Research)(DKFZ))
Annual Program Workshop
September 19, 2007 Assessing the Ability of Continuum Solvation Models to Accurately Model Nucleic Acid Electrostatics
Nathan Baker (Washington University School of Medicine)
Annual Program Workshop
September 19, 2007 Macroscopic Modeling of a Circular Rod with Twist and Bend in a Viscous Fluid
Sookkyung Lim (University of Cincinnati)
Annual Program Workshop
September 18, 2007 Torque in Stretched and Twisted DNA
John Marko (Northwestern University)
Annual Program Workshop
September 18, 2007 Nucleosome Dynamics Probed by Torsional Manipulation of Single Chromatin Fibers
Ariel Prunell (Institut Jacques Monod)
Annual Program Workshop
September 17, 2007 Closing the Loop on Protein-DNA Interactions
Stephen Levene (University of Texas at Dallas)
Annual Program Workshop
September 17, 2007 Breaking DNA Double Helix by Bending Stress
Alexander Vologodskii (New York University)
Annual Program Workshop
September 16, 2007 Smallest Containers Enclosing Random Equilateral Polygons
Eric Rawdon (University of St. Thomas)
Annual Program Workshop
September 16, 2007 A New Twist Step-parameter Coupled to the Chirality of the Global Structure of DNA
Irwin Tobias (Rutgers, The State University Of New Jersey )
Annual Program Workshop
September 16, 2007 Structure and Dynamics of the Four-way DNA Junction
David Lilley (University of Dundee)
Annual Program Workshop
September 16, 2007 DNA Mechanics: Deformation and Recognition
Richard Lavery (Centre National de la Recherche Scientifique (CNRS))
Annual Program Workshop
Public Lecture
Algebra, Statistics, Computation, and Biology
Date Title / Speaker
October 09, 2007 Algebra, Statistics, Computation, and Biology
Bernd Sturmfels (University of California, Berkeley)
Public Lecture
Tutorial
Mathematics of Nucleic Acids
Date Title / Speaker
September 15, 2007 Part II: DNA Statistical Mechanics/DNA Dynamics
David Swigon (University of Pittsburgh)
Tutorial
September 15, 2007 Part I: DNA Topology and Geometry/DNA Elasticity
David Swigon (University of Pittsburgh)
Tutorial

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