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IMA Video Library

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Annual Program Workshop
Organization of Biological Networks
Date Title / Speaker
March 03, 2008 The Evolutionary Design of Proteins
Rama Ranganathan (UT Southwestern Medical Center)
Annual Program Workshop
Protein Folding
Date Title / Speaker
January 18, 2008 Simulations of Peptide Folding and Dynamics
Krzysztof Kuczera (University of Kansas)
Annual Program Workshop
January 18, 2008 Simulations on BlueGene of a Fast Folding Mutant of Lambda(6-85)
Annual Program Workshop
January 18, 2008 The Limitations of Temperature Replica Exchange (T-REMD) for Protein Folding
Jed Pitera (IBM Research Division)
Annual Program Workshop
January 17, 2008 Multistage Optimization for Protein-protein Docking
Sandor Vajda (Boston University)
Annual Program Workshop
January 17, 2008 Cluster Optimization in Protein Docking
Julie Mitchell (University of Wisconsin, Madison)
Annual Program Workshop
January 17, 2008 Structure-based Maximal Affinity Model Predicts Small-molecule Druggability
Alan Cheng (Amgen Cambridge Research Center)
Annual Program Workshop
January 17, 2008 Transition States in Protein Folding
Thomas Weikl (Max Planck Institute for Colloids and Interfaces)
Annual Program Workshop
January 17, 2008 The Energy Landscape for Folding and Molecular Motors
José Onuchic (University of California, San Diego)
Annual Program Workshop
January 17, 2008 Entropic and Enthalpic Barriers in Cooperative Protein Folding
Hue-Sun Chan (University of Toronto)
Annual Program Workshop
January 17, 2008 Free Energies and Kinetics of Protein Folding From Coarse Master Equations
Gerhard Hummer (National Institutes of Health (NIH))
Annual Program Workshop
January 16, 2008 Mapping Evolutionary Pathways of HIV-1 Drug Resistance Using Conditional Selection Pressure
Christopher Lee (University of California, Los Angeles)
Annual Program Workshop
January 16, 2008 Annotated Tertiary Interactions in RNA Structures Reveal New Interactions, Correlations in Motifs and Composite Motifs
Christian Laing (New York University)
Annual Program Workshop
January 16, 2008 The Electrostatic Free Energy Landscape for Nucleic Acid Folding - Beyond the Poisson-Boltzmann Equation
Shi-Jie Chen (University of Missouri)
Annual Program Workshop
January 16, 2008 Improving Nonequilibrium Free Energy Estimates by Enhancing Phase Space Overlap
Christopher Jarzynski (University of Maryland)
Annual Program Workshop
January 16, 2008 Current Issues in Understanding Complex Biological Networks
Hans Othmer (University of Minnesota, Twin Cities)
Annual Program Workshop
January 16, 2008 Mathematical Models of Folded and Unfolded Protein Ensembles
Gregory Chirikjian (Johns Hopkins University)
Annual Program Workshop
January 16, 2008 Exploring Global Energy Landscape of Lattice Protein Models via Monte Carlo Methods
Samuel Kou (Harvard University)
Annual Program Workshop
January 15, 2008 The Network of Sequence Flow Between Protein Structures
Ron Elber (The University of Texas at Austin)
Annual Program Workshop
January 15, 2008 Structural Control of Motions?
Robert Jernigan (Iowa State University)
Annual Program Workshop
January 15, 2008 Network Models for Protein Dynamics and Allostery: Application to GroEL-GroES
Ivet Bahar (University of Pittsburgh)
Annual Program Workshop
January 15, 2008 Geometrical Methods for the Efficient Exploration of Protein Conformation Space
Evangelos Coutsias (University of New Mexico)
Annual Program Workshop
January 15, 2008 Computational Experiments in Coarse-graining Atomistic Simulations
Yannis Kevrekidis (Princeton University)
Annual Program Workshop
January 15, 2008 Coarse-grained Parameterizations of Biomolecular Systems
Peter Kramer (Rensselaer Polytechnic Institute)
Annual Program Workshop
January 15, 2008 Simulation Methods for Stochastic Chemical Systems that Arise from a Random Time Change Representation
David Anderson (University of Wisconsin, Madison)
Annual Program Workshop
January 14, 2008 Exact Methods for Simplified Protein Models
Rolf Backofen (Albert-Ludwigs-Universität Freiburg)
Annual Program Workshop
January 14, 2008 Modeling Ensembles of Transmembrane Beta-barrel Proteins
Jérôme Waldispühl (Massachusetts Institute of Technology)
Annual Program Workshop
January 14, 2008 Engineering Protein Structure and Function with Theoretical Protein Design
Jeffery Saven (University of Pennsylvania)
Annual Program Workshop
January 14, 2008 Alpha-helical Topology and Tertiary Structure Prediction of Globular Proteins
Christodoulos Floudas (Princeton University)
Annual Program Workshop
Public Lecture
Mathematical Modeling in Medicine, Sports, and the Environment
Date Title / Speaker
February 13, 2008 Mathematical Modeling in Medicine, Sports, and the Environment
Alfio Quarteroni (Politecnico di Milano)
Public Lecture

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