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IMA Video Library

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Annual Program Workshop
Protein Folding
Date Title / Speaker
January 15, 2008 Network Models for Protein Dynamics and Allostery: Application to GroEL-GroES
Ivet Bahar (University of Pittsburgh)
 Annual Program Workshop
January 15, 2008 Geometrical Methods for the Efficient Exploration of Protein Conformation Space
Evangelos Coutsias (University of New Mexico)
 Annual Program Workshop
January 15, 2008 Computational Experiments in Coarse-graining Atomistic Simulations
Yannis Kevrekidis (Princeton University)
 Annual Program Workshop
January 15, 2008 Coarse-grained Parameterizations of Biomolecular Systems
Peter Kramer (Rensselaer Polytechnic Institute)
 Annual Program Workshop
January 15, 2008 Simulation Methods for Stochastic Chemical Systems that Arise from a Random Time Change Representation
David Anderson (University of Wisconsin, Madison)
 Annual Program Workshop
January 14, 2008 Exact Methods for Simplified Protein Models
Rolf Backofen (Albert-Ludwigs-Universität Freiburg)
 Annual Program Workshop
January 14, 2008 Modeling Ensembles of Transmembrane Beta-barrel Proteins
Jérôme Waldispühl (Massachusetts Institute of Technology)
 Annual Program Workshop
January 14, 2008 Engineering Protein Structure and Function with Theoretical Protein Design
Jeffery Saven (University of Pennsylvania)
 Annual Program Workshop
January 14, 2008 Alpha-helical Topology and Tertiary Structure Prediction of Globular Proteins
Christodoulos Floudas (Princeton University)
 Annual Program Workshop
January 14, 2008 Simple Models for Simulating Replica Exchange Simulations of Protein Folding and Binding
Ronald Levy (Rutgers, The State University Of New Jersey )
 Annual Program Workshop
January 14, 2008 Assessing the Performance of Poisson-Boltzmann Continuum Solvation Models
Nathan Baker (Washington University School of Medicine)
 Annual Program Workshop
RNA in Biology, Bioengineering and Nanotechnology
Date Title / Speaker
November 02, 2007 Concluding remarks
Tamar Schlick (New York University), Eric Westhof (Université de Strasbourg I (Louis Pasteur))
 Annual Program Workshop
November 02, 2007 RNA Tertiary Structure as a Proto-language for Nano-construction
Luc Jaeger (University of California)
 Annual Program Workshop
November 02, 2007 Computational Approaches to RNA Nanodesign
Bruce Shapiro (National Cancer Institute)
 Annual Program Workshop
November 01, 2007 RNA / RNP Synthetic Biology
Tan Inoue (Kyoto University)
 Annual Program Workshop
November 01, 2007 Exploring the Energy Landscape of RNA
Devarajan Thirumalai (University of Maryland)
 Annual Program Workshop
November 01, 2007 A Topological Classification of RNA Folds
Henri Orland (Commissariat à l'Énergie Atomique (CEA))
 Annual Program Workshop
November 01, 2007 Structure, Dynamics and Catalytic Mechanisms of Two Ribozymes
David Lilley (University of Dundee)
 Annual Program Workshop
November 01, 2007 How RNA Tells Right from Wrong: Base Pairs, Tertiary Interactions, and Counterions in RNA Folding
Sarah Woodson (Johns Hopkins University)
 Annual Program Workshop
October 31, 2007 Architecture and Reactivity of RNA
Eric Westhof (Université de Strasbourg I (Louis Pasteur))
 Annual Program Workshop
October 31, 2007 Ultraconserved Nonsense: Pervasive Unproductive Splicing of SR Proteins

Associated with Exceptionally Conserved DNA Elements -- A Bizarre Prevalent Mode of Gene Regulation
Steven Brenner (University of California, Berkeley)
 Annual Program Workshop
Tutorial
Mathematics of Proteins
Date Title / Speaker
January 11, 2008 An introduction to multigrid techniques
Bobby Philip (Los Alamos National Laboratory)
 Tutorial
January 11, 2008 Knot theory and proteins
Isabel Darcy (The University of Iowa)
 Tutorial
January 11, 2008 Geometric simulation of protein flexibility
Ileana Streinu (Smith College)
 Tutorial
January 11, 2008 Lecture 3: Simulating protein folding
Michael Levitt (Stanford University)
 Tutorial
January 11, 2008 Part 3: Protein shape descriptors
Patrice Koehl (University of California)
 Tutorial
January 10, 2008 Lecture 2: Simulating molecular motion
Michael Levitt (Stanford University)
 Tutorial
January 10, 2008 Part 2: Electrostatics
Patrice Koehl (University of California)
 Tutorial
January 10, 2008 The geometry of biomolecular solvation. Part 1: Hydrophobicity
Patrice Koehl (University of California, Davis)
 Tutorial
January 10, 2008 Lecture 1: Fundamental forces and molecular architecture
Michael Levitt (Stanford University)
 Tutorial

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