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Annual Program Workshop
Protein Folding
Date Title / Speaker
January 17, 2008 Multistage Optimization for Protein-protein Docking
Sandor Vajda (Boston University)
Annual Program Workshop
January 17, 2008 Cluster Optimization in Protein Docking
Julie Mitchell (University of Wisconsin, Madison)
Annual Program Workshop
January 17, 2008 Structure-based Maximal Affinity Model Predicts Small-molecule Druggability
Alan Cheng (Amgen Cambridge Research Center)
Annual Program Workshop
January 17, 2008 Transition States in Protein Folding
Thomas Weikl (Max Planck Institute for Colloids and Interfaces)
Annual Program Workshop
January 17, 2008 The Energy Landscape for Folding and Molecular Motors
José Onuchic (University of California, San Diego)
Annual Program Workshop
January 17, 2008 Entropic and Enthalpic Barriers in Cooperative Protein Folding
Hue-Sun Chan (University of Toronto)
Annual Program Workshop
January 17, 2008 Free Energies and Kinetics of Protein Folding From Coarse Master Equations
Gerhard Hummer (National Institutes of Health (NIH))
Annual Program Workshop
January 16, 2008 Mapping Evolutionary Pathways of HIV-1 Drug Resistance Using Conditional Selection Pressure
Christopher Lee (University of California, Los Angeles)
Annual Program Workshop
January 16, 2008 Annotated Tertiary Interactions in RNA Structures Reveal New Interactions, Correlations in Motifs and Composite Motifs
Christian Laing (New York University)
Annual Program Workshop
January 16, 2008 The Electrostatic Free Energy Landscape for Nucleic Acid Folding - Beyond the Poisson-Boltzmann Equation
Shi-Jie Chen (University of Missouri)
Annual Program Workshop
January 16, 2008 Improving Nonequilibrium Free Energy Estimates by Enhancing Phase Space Overlap
Christopher Jarzynski (University of Maryland)
Annual Program Workshop
January 16, 2008 Current Issues in Understanding Complex Biological Networks
Hans Othmer (University of Minnesota, Twin Cities)
Annual Program Workshop
January 16, 2008 Mathematical Models of Folded and Unfolded Protein Ensembles
Gregory Chirikjian (Johns Hopkins University)
Annual Program Workshop
January 16, 2008 Exploring Global Energy Landscape of Lattice Protein Models via Monte Carlo Methods
Samuel Kou (Harvard University)
Annual Program Workshop
January 15, 2008 The Network of Sequence Flow Between Protein Structures
Ron Elber (The University of Texas at Austin)
Annual Program Workshop
January 15, 2008 Structural Control of Motions?
Robert Jernigan (Iowa State University)
Annual Program Workshop
January 15, 2008 Network Models for Protein Dynamics and Allostery: Application to GroEL-GroES
Ivet Bahar (University of Pittsburgh)
Annual Program Workshop
January 15, 2008 Geometrical Methods for the Efficient Exploration of Protein Conformation Space
Evangelos Coutsias (University of New Mexico)
Annual Program Workshop
January 15, 2008 Computational Experiments in Coarse-graining Atomistic Simulations
Yannis Kevrekidis (Princeton University)
Annual Program Workshop
January 15, 2008 Coarse-grained Parameterizations of Biomolecular Systems
Peter Kramer (Rensselaer Polytechnic Institute)
Annual Program Workshop
January 15, 2008 Simulation Methods for Stochastic Chemical Systems that Arise from a Random Time Change Representation
David Anderson (University of Wisconsin, Madison)
Annual Program Workshop
January 14, 2008 Exact Methods for Simplified Protein Models
Rolf Backofen (Albert-Ludwigs-Universität Freiburg)
Annual Program Workshop
January 14, 2008 Modeling Ensembles of Transmembrane Beta-barrel Proteins
Jérôme Waldispühl (Massachusetts Institute of Technology)
Annual Program Workshop
January 14, 2008 Engineering Protein Structure and Function with Theoretical Protein Design
Jeffery Saven (University of Pennsylvania)
Annual Program Workshop
January 14, 2008 Alpha-helical Topology and Tertiary Structure Prediction of Globular Proteins
Christodoulos Floudas (Princeton University)
Annual Program Workshop
January 14, 2008 Simple Models for Simulating Replica Exchange Simulations of Protein Folding and Binding
Ronald Levy (Rutgers, The State University Of New Jersey )
Annual Program Workshop
January 14, 2008 Assessing the Performance of Poisson-Boltzmann Continuum Solvation Models
Nathan Baker (Washington University School of Medicine)
Annual Program Workshop
Tutorial
Mathematics of Proteins
Date Title / Speaker
January 11, 2008 An introduction to multigrid techniques
Bobby Philip (Los Alamos National Laboratory)
Tutorial
January 11, 2008 Knot theory and proteins
Isabel Darcy (The University of Iowa)
Tutorial
January 11, 2008 Geometric simulation of protein flexibility
Ileana Streinu (Smith College)
Tutorial

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