Campuses:

Talks

Date Title / Speaker Event
October 22, 2003 Poxviruses and Adaptive Genome Evolution
Aoife McLysaght (Trinity College)
IMA/RECOMB Satellite WS on Comp. Genomics
October 22, 2003 Models and Methods for Phylogenomics
Elisabeth Tillier (Princess Margaret Hospital)
IMA/RECOMB Satellite WS on Comp. Genomics
October 21, 2003 Transforming Men into Mice: Lessons from Human and Mouse Genomic Sequences
Pavel Pevzner (University of California, San Diego)
IMA/RECOMB Satellite WS on Comp. Genomics
October 21, 2003 The Landscape of Comparative Genomics in Mammals
Stephen O'Brien (National Cancer Institute)
IMA/RECOMB Satellite WS on Comp. Genomics
October 21, 2003 Distance-Based Genome Rearrangement Phylogeny
Li-San Wang (The University of Texas at Austin)
IMA/RECOMB Satellite WS on Comp. Genomics
October 21, 2003 A Statistical Approach to the Estimation of Phylogeny from Genome Arrangements
Bret Larget (University of Wisconsin, Madison)
IMA/RECOMB Satellite WS on Comp. Genomics
October 20, 2003 High Rates of Genome Rearrangements in Malaria Mosquitoes, Anopheles gambiae and A. funestus
Igor Sharakhov (University of Notre Dame)
IMA/RECOMB Satellite WS on Comp. Genomics
October 20, 2003 Origins of Recently Gained Introns in Caenorhabditis
Avril Coghlan (Trinity College)
IMA/RECOMB Satellite WS on Comp. Genomics
October 20, 2003 A Comparative Approach for Multiple Gene Network Inference Using Time-Series Gene Expression Data
Guillaume Bourque (University of Montreal)
IMA/RECOMB Satellite WS on Comp. Genomics
October 20, 2003 Comparative Gene Prediction
Roderic Guigó (Instituto Municipal de Investigación Mèdica (IMIM))
IMA/RECOMB Satellite WS on Comp. Genomics
October 20, 2003 Reconstructing the Ancestor of a Modern Genome with Multigene Families
Nadia El-Mabrouk (University of Montreal)
IMA/RECOMB Satellite WS on Comp. Genomics
October 20, 2003 The Origins of Genome Complexity
Michael Lynch (Indiana University)
IMA/RECOMB Satellite WS on Comp. Genomics
October 20, 2003 Welcome and Introduction IMA/RECOMB Satellite WS on Comp. Genomics
October 17, 2003 Mathematical Programming and Multiaircraft Conflict Resolution
Dharmashankar Subramanian (Honeywell)
Mathematical Programming and Multiaircraft Conflict Resolution - Dharmashankar Subramanian (Honeywell Labs)
October 10, 2003 Challenges in Industrial Optimization � Technical or Otherwise
Indraneel Das (United Technologies Corporation)
Challenges in Industrial Optimization � Technical or Otherwise - Indraneel Das (United Technologies Research Center)
October 03, 2003 Concluding Remarks by Organizers
Michael Newton (University of Wisconsin, Madison), Giovanni Parmigiani (Johns Hopkins University)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 03, 2003 Joint Calibration and Fitting of Microarray Data
Terry Therneau (Mayo Clinic)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 03, 2003 Prediction of Survival
Mark van der Laan (University of California, Berkeley)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 02, 2003 Bayesian Methods for Microarray Data Analysis
Marco Ramoni (Harvard Medical School)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 02, 2003 Encoding Prior Biological Knowledge in Functional Genomics Analysis
Michael Ochs (Fox Chase Cancer Center)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 02, 2003 Hidden Markov Models for Microarray Time Course Data in Multiple Biological Conditions
Christina Kendziorski (University of Wisconsin, Madison)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 02, 2003 Classification of Microarray Gene-Expression Data
Geoff McLachlan (University of Queensland)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 01, 2003 Mining a Gene Expression Database
Peter Munson (National Institutes of Health)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 01, 2003 Interpretation and Transformation of Microarray Data
Wolfgang Huber (Deutsches Krebsforschungszentrum (Cancer Research)(DKFZ))
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 01, 2003 Comparing Normalization Methods Based on Splice Array Experiments
Jean Yang (University of San Francisco)
Statistical Methods for Gene Expression: Microarrays and Proteomics
October 01, 2003 The Analysis of Proteomics Spectra from Serum Samples
Keith Baggerly (The University of Texas at Austin)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 30, 2003 Beyond Significance: Integrating Diverse Data Types to Extract Biological Meaning from Microarrays
John Quackenbush (The Institute for Genomic Research)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 30, 2003 Empirical Evaluation of Methodologies for Microarray Data Analysis, With Some Thoughts on Statistical Implications
Kathleen Kerr (University of Washington)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 30, 2003 Microarray Time Course Gene Expresssion Studies: Some Problems and Statistical Methods
Hongzhe Li (University of California)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 30, 2003 Loss-based Estimation Methodology with Cross-validation: Prediction of Clinical Outcomes Using Microarray Data
Sandrine Dudoit (University of California, Berkeley)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 29, 2003 Integrative Genomics and its Implications for Clinical Research and Care: What Are the Real Issues Beyond Analysis?
Atul Butte (Children's Hospital Informatics Program)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 29, 2003 Measurement Errors and Data Transformation for Gene Expression Data, Proteomics and Metabolomics Data
David Rocke (University of California)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 29, 2003 Applying High-Dimensional Approaches to Microarray Research
David Allison (University of Alabama at Birmingham)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 29, 2003 Mining a Tandem Mass Spectrometry Database to Determine the Trends and Global Factors Influencing Peptide Fragmentation
Terence Speed (University of California, Berkeley)
Statistical Methods for Gene Expression: Microarrays and Proteomics
September 29, 2003 Welcome and Introduction Statistical Methods for Gene Expression: Microarrays and Proteomics
September 26, 2003 Simulation of Extreme Events in Optical Communication System
Dipak Chowdhury (Corning Incorporated)
Simulation of Extreme Events in Optical Communication System - Dipak Chowdhury (Corning Incorporated)
September 19, 2003 Concluding Remarks by Organizers
Sallie Keller-Mcnulty (Los Alamos National Laboratory), Michael Newton, Simon Tavare (University of Southern California), Alyson Wilson (Los Alamos National Laboratory)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 19, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 19, 2003 Assessment: Optimization and Resource (e.g., R&D) Allocation, including Evolutionary Methods
Sallie Keller-Mcnulty (Los Alamos National Laboratory)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 19, 2003 Quantification/Information Integration: Integration of Hetrogeneous Information Sources through Bayesian Methods
Alyson Wilson (Los Alamos National Laboratory)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 19, 2003 Quantification/Information Integration: Integration of Hetrogeneous Information Sources through Bayesian Methods
Alyson Wilson (Los Alamos National Laboratory)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 19, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 19, 2003 System Representations: Graphical Models and Metaphors
Andrew Koehler (Los Alamos National Laboratory)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 19, 2003 Complex Multidisciplinary R&D: Characterization of the Scientific Method and Decision Processes in this Context



Mapping Decision Spaces: Role of Ethnographic Methods

Sallie Keller-Mcnulty (Los Alamos National Laboratory), Greg Wilson (Los Alamos National Laboratory)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Approximate Bayesian Computation
Simon Tavare (University of Southern California)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Stochastic Computation Case Study 4: Gene Expression: Hierarchical Mixture Models
Michael Newton
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Graphs and Networks in R
Robert Gentleman (Harvard School of Public Health)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 18, 2003 Stochastic Computation Case Study 3: Cancer Genomics
Michael Newton
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Hands-on session on R
Robert Gentleman (Harvard School of Public Health)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Genetic Variation and the HapMap Project 2
Simon Tavare (University of Southern California)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Stochastic Computation Case Study 2: Phylogenetics, Bayesian Analysis of Trees
Michael Newton
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Bioconductor, with Array Analysis
Robert Gentleman (Harvard School of Public Health)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 17, 2003 Stochastic Computation Case Study 1: Dectecting Motifs, Lawrence-Liu Model
Michael Newton
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Genetic Variation and the HapMap Project 1
Simon Tavare (University of Southern California)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Bioconductor, with Array Analysis
Robert Gentleman (Harvard School of Public Health)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Intro to Molecular Biology 2
Simon Tavare (University of Southern California)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 16, 2003 Introduction to Markov Chain Monte Carlo
Charles Geyer (University of Minnesota, Twin Cities)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 After the Human Genome Project: Systems Biology and Predictive, Preventive and Personalized Medicine
Leroy Hood (Institute for Systems Biology)
After the Human Genome Project: Systems Biology and Predictive, Preventive and Personalized Medicine
September 15, 2003 Basic Introduction to R and Its Philosophy
Robert Gentleman (Harvard School of Public Health)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 Microarrays: Biological, Technologicial and Analytical Issues
Arkady Khodursky (University of Minnesota, Twin Cities)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 Basic Introduction to R and Its Philosophy
Robert Gentleman (Harvard School of Public Health)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 Discussion Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 Intro to Molecular Biology 1
Simon Tavare (University of Southern California)
Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 15, 2003 Welcome and Introduction Tools for Model and Data Integration in the Genome Sciences/Information Integration Technologies for Complex Systems
September 12, 2003 Applied Mathematics and Disk Drive Design
Robert Crone (Seagate Technology)
Applied Mathematics and Disk Drive Design - Robert Crone (Seagate Technology)
June 27, 2003 Oscillatory Behavior in E. Coli During Lactose Utilization
Donald French (University of Cincinnati)
Cellular Physiology
June 27, 2003 Report on Calcium Homeostasis
Alex Himonas (University of Notre Dame), Brynja Kohler (The University of Utah), Brian Martensen (The University of Texas at Austin), Trygve Nilssen (Simula Labs), Bjorn Sandstede (The Ohio State University), Milena Stanislavova (University of Kansas)
Cellular Physiology
June 26, 2003 Tissue Growth in Cell-Contracted Biopolymer Scaffolds
Robert Tranquillo (University of Minnesota, Twin Cities)
Cellular Physiology
June 26, 2003 Modeling Morphogenesis
Alex Mogilner (University of California)
Cellular Physiology
June 26, 2003 Spatial Patterns and Signals
James Keener (The University of Utah)
Cellular Physiology
June 25, 2003 Models of an Autonomous Rhythmic Hormone Delivery System
Ronald Siegel (University of Minnesota, Twin Cities)
Cellular Physiology
June 25, 2003 Large Gen and Biochem Networks
Alex Mogilner (University of California)
Cellular Physiology
June 25, 2003 Gels, Biofilms and Quorum Sensing
James Keener (The University of Utah)
Cellular Physiology
June 24, 2003 Neural Connection
Clifton Ragsdale (University of Chicago)
Cellular Physiology
June 24, 2003 Neutrofil Chemotaxis
Alex Mogilner (University of California)
Cellular Physiology
June 24, 2003 Axons and Waves
James Keener (The University of Utah)
Cellular Physiology
June 23, 2003 The Role of Cyclin E-Cdk2 in the Cell Cycle
Robert Sheaff (University of Minnesota, Twin Cities)
Cellular Physiology
June 23, 2003 Cell Migration
Alex Mogilner (University of California)
Cellular Physiology
June 23, 2003 Intercellular Communication
James Keener (The University of Utah)
Cellular Physiology
June 20, 2003 L1 CAM is Required for Proprer Neuronal Placement Embryogenesis
Lihsia Chen (University of Minnesota, Twin Cities)
Cellular Physiology
June 20, 2003 Physics of Biological Gels
Alex Mogilner (University of California)
Cellular Physiology
June 20, 2003 Cell Cycle
James Keener (The University of Utah)
Cellular Physiology
June 19, 2003 Modeling the Role of Tension in Yeast Kinetochore Microtubule Dynamics
David Odde (University of Minnesota, Twin Cities)
Cellular Physiology
June 19, 2003 Muscle Contraction
Alex Mogilner (University of California)
Cellular Physiology
June 19, 2003 Calcium EC Coupling
James Keener (The University of Utah)
Cellular Physiology
June 18, 2003 Model of Cell Crawling: Nematode Sperm Cell
Alex Mogilner (University of California)
Cellular Physiology

Pages