Software (in Matlab)
AIRE (Automated Invasive Radii Estimation) - tool for estimating the invasive radii of tumor spheroids grown in vitro.
FIRE (FIbeR Extraction) - tool for extracting network architecture from 3d, confocal images of biopolymer networks.
BEAMS (Beam Energy And Minimization Simulation) - code for simulating 3d beam network deformation.
