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Searching Results for W1.14-18.08:
Exact methods for simplified protein models
, Rolf Backofen
(Albert-Ludwigs-Universität Freiburg)
Alpha-helical topology and tertiary structure prediction of globular proteins
, Christodoulos A. Floudas
(Princeton University)
Assessing the performance of Poisson-Boltzmann continuum solvation models
, Nathan A. Baker
(Washington University School of Medicine)
Simple models for simulating replica exchange simulations of protein folding and binding
, Ronald M. Levy
(Rutgers University)
Engineering protein structure and function with theoretical protein design
, Jeffery G. Saven
(University of Pennsylvania)
Modeling ensembles of transmembrane beta-barrel proteins
, Jérôme Waldispühl
(Massachusetts Institute of Technology)
The network of sequence flow between protein structures
, Ron Elber
(University of Texas)
Simulation methods for stochastic chemical systems that arise from a random time change representation
, David F Anderson
(University of Wisconsin)
Geometrical methods for the efficient exploration of protein conformation space
, Evangelos A. Coutsias
(University of New Mexico)
Network models for protein dynamics and allostery: Application to GroEL-GroES
, Ivet Bahar
(University of Pittsburgh)
Computational experiments in coarse-graining atomistic simulations
, Yannis G. Kevrekidis
(Princeton University)
Structural control of motions?
, Robert L. Jernigan
(Iowa State University)
Coarse-grained parameterizations of biomolecular systems
, Peter R. Kramer
(Rensselaer Polytechnic Institute)
The electrostatic free energy landscape for nucleic acid folding - beyond the Poisson-Boltzmann equation
, Shi-Jie Chen
(University of Missouri)
Improving nonequilibrium free energy estimates by enhancing phase space overlap
, Christopher Jarzynski
(University of Maryland)
Exploring global energy landscape of lattice protein models via Monte Carlo methods
, Samuel Kou
(Harvard University)
Annotated tertiary interactions in RNA structures reveal new interactions, correlations in motifs and composite motifs
, Christian E. Laing
(New York University)
Mapping evolutionary pathways of HIV-1 drug resistance using conditional selection pressure
, Christopher J. Lee
(University of California)
Current issues in understanding complex biological networks
, Hans G. Othmer
(University of Minnesota)
Mathematical models of folded and unfolded protein ensembles
, Gregory S. Chirikjian
(Johns Hopkins University)
Structure-based maximal affinity model predicts small-molecule druggability
, Alan C. Cheng
(Amgen Cambridge Research Center)
Entropic and enthalpic barriers in cooperative protein folding
, Hue-Sun Chan
(University of Toronto)
Free energies and kinetics of protein folding from coarse master equations
, Gerhard Hummer
(National Institutes of Health (NIH))
Cluster optimization in protein docking
, Julie C. Mitchell
(University of Wisconsin)
The energy landscape for folding and molecular motors
, José Nelson Onuchic
(University of California, San Diego)
Multistage optimization for protein-protein docking
, Sandor Vajda
(Boston University)
Transition states in protein folding
, Thomas Weikl
(Max Planck Institute for Colloids and Interfaces)
Simulations of peptide folding and dynamics
, Krzysztof Kuczera
(University of Kansas)
The limitations of temperature replica exchange (T-REMD) for protein folding
, Jed W. Pitera
(IBM Research Division)
Simulations on BlueGene of a fast folding mutant of lambda(6-85)
, William Swope
(IBM)
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