Books about cytoskeleton and cell movements:
1) Absolutely a must is a terrific book:
Bray, D. (2002). Cell Movements (New York: Garland).
2) Books with math and physics:
Boal, D. (2002). Mechanics of the Cell (Cambridge:
Cambridge University Press).
Howard, J. (2001). Mechanics of Motor Proteins and the
Cytoskeleton (Sunderland, MA: Sinauer).
Dill, K., and S. Bromberg (2003). Molecular Driving Forces:
Statistical Thermodynamics in Chemistry and Biology
(New York: Garland).
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How it all started with math and actin and microtubules:
Hill, T., and Kirschner, M. (1982). Bioenergetics and kinetics of
microtubule and actin filament assembly and disassembly.
Intl. Rev. Cytol. 78, 1-125
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Feynman's ratchet:
Feynman, R., Leighton, R., and Sands, M. (1963).
The Feynman Lectures on Physics, Volume 1
(Reading, MA: Addison-Wesley).
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Acrosomal process:
Olbris DJ, Herzfeld J.
An analysis of actin delivery in the acrosomal process of thyone.
Biophys J. 1999 Dec;77(6):3407-23.
There is a model in this paper and references to biological
papers and earlier modeling efforts.
Oster, G., Perelson, A., and Tilney, L. (1982). A mechanical
model for acrosomal extension in Thyone. J. Math. Biol 15, 259-265
Oster, G.F. (1984). On the crawling of cells.
J Embryol Exp Morphol 83 Suppl, 329-364
Tilney, L.G., and Inoue, S. (1982). Acrosomal reaction of Thyone
sperm. II. The kinetics and possible mechanism of acrosomal process
elongation. J Cell Biol 93, 820-827
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Latest reviews/models of actin turnover in the lamellipod:
Pollard, T.D., and Borisy, G.G. (2003). Cellular motility driven by
assembly and disassembly of actin filaments. Cell 112, 453-465
Pollard, T., Blanchoin, L., and Mullins, R. (2001). Actin dynamics.
Journal of Cell Science 114, 3-4
Pantaloni, D., Le Clainche, C., and Carlier, M.F. (2001). Mechanism
of actin-based motility. Science 292, 1502-1506
Abraham, V.C., Krishnamurthi, V., Taylor, D.L., and Lanni, F. (1999).
The actin-based nanomachine at the leading edge of migrating cells.
Biophys J 77, 1721-1732
Mogilner, A., and Edelstein-Keshet, L. (2002). Regulation of actin
dynamics in rapidly moving cells: a quantitative analysis.
Biophys J 83, 1237-1258
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Force of actin protrusion:
Theriot, J.A. (2000). The polymerization motor. Traffic 1, 19-28.
Peskin, C.S., Odell, G.M., and Oster, G. (1993). Cellular motions
and thermal fluctuations: the Brownian ratchet.
Biophys. J. 65, 316-324
Mogilner, A., and Oster, G. (1996). The physics of lamellipodial
protrusion. Euro. Biophs. J. 25, 47-53.
Mogilner, A., and Oster, G. (1996). Cell motility driven by actin
polymerization. Biophys. J. 71, 3030-3045.
Mogilner, A., and Oster, G. (1999). The polymerization ratchet
model explains the force-velocity relation for growing
microtubules. Eur. J. Biophys. 28, 235-242.
Mogilner, A., and Oster, G. (2003). Force Generation by Actin
Polymerization II: The Elastic Ratchet and Tethered Filaments.
Biophys J 84, 1591-1605
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Forces and movements in mitosis:
Inoue, S., and Salmon, E.D. (1995). Force generation by microtubule
assembly/disassembly in mitosis and related movements.
Mol. Biol. Cell 6, 1619-1640.
Howard, J., and Hyman, A.A. (2003). Dynamics and mechanics of the
microtubule plus end. Nature 422, 753-758
J. M. Scholey, I. Brust-Mascher, A. Mogilner, Cell division,
Nature , 422 , 746-752 (2003).
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Cool forces and movements in cell life:
Mahadevan, L., and Matsudaira, P. (2000). Motility powered by
supramolecular springs and ratchets. Science 288, 95-100
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Molecular motors:
Mogilner, A., Elston, T., Wang, H.-Y., and Oster, G. (2002).
Molecular motors: Theory and Examples. In Computational Cell
Biology, C.P. Fall, E. Marland, J. Tyson and J. Wagner, eds.
(NY: Springer), pp. 321-380.
Oster, G., and Wang, H. (2003). Rotary protein motors.
Trends in Cell Biology 13, 114-121.
Schliwa, M. ed. (2002). Molecular Motors (Weinheim: Wiley-VCH).
Oster, G. (2002). Darwin's motors. Nature 417, 25
Bustamante, C., Keller, D., and Oster, G. (2001). The physics
of molecular motors. Acc. Chem. Res. 34, 412-420.
Oster, G., and Wang, H. (2000). Reverse engineering a protein:
The mechanochemistry of ATP synthase. BBA 1458, 482-510.
Visscher, K., Schnitzer, M.J., and Block, S.M. (1999). Single
kinesin molecules studied with a molecular force clamp.
Nature 400, 184-189.
Ruegg, C., Veigel, C., Molloy, J.E., Schmitz, S., Sparrow, J.C.,
and Fink, R.H. (2002). Molecular motors: force and movement
generated by single myosin II molecules.
News Physiol Sci 17, 213-218
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Listeria:
Tilney, L.G., and Portnoy, D.A. (1989). Actin filaments and the
growth, movement, and spread of the intracellular bacterial
parasite, Listeria monocytogenes. J Cell Biol 109, 1597-1608
Cameron, L.A., Giardini, P.A., Soo, F.S., and Theriot, J.A. (2000).
Secrets of actin-based motility revealed by a bacterial pathogen.
Nat Rev Mol Cell Biol 1, 110-119
Loisel, T.P., Boujemaa, R., Pantaloni, D., and Carlier, M.F. (1999).
Reconstitution of actin-based motility of Listeria and Shigella
using pure proteins. Nature 401, 613-616
Goldberg, M.B. (2001). Actin-based motility of intracellular
microbial pathogens. Microbiol Mol Biol Rev 65, 595-626
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Angular organization of actin:
Maly, I.V., and Borisy, G.G. (2001). Self-organization of a
propulsive actin network as an evolutionary process.
Proc Natl Acad Sci U S A 98, 11324-11329
Civelecoglu, G. and Edelstein-Keshet, L. (1994) Modelling the
dynamics of F-Actin in the cell, Bull. Math. Biol. 56 (4), 587-616.
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Microtubules capturing chromosomes:
Biggins, S., and Walczak, C.E. (2003). Captivating capture: how
microtubules attach to kinetochores. Current Biology 13, R449-R460
Holy TE, Leibler S.
Dynamic instability of microtubules as an efficient way to search
in space. Proc Natl Acad Sci U S A. 1994 Jun 7;91(12):5682-5.
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Models for dynamic instability:
Flyvbjerg H, Holy TE, Leibler S.
Stochastic dynamics of microtubules: A model for caps and
catastrophes. Phys Rev Lett. 1994 Oct 24;73(17):2372-2375.
Dogterom M, Leibler S.
Physical aspects of the growth and regulation of microtubule
structures. Phys Rev Lett. 1993 Mar 1;70(9):1347-1350.
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This was the seminal paper on cell crawling:
Abercrombie, M. (1980). The Croonian lecture, 1978. The crawling
movement of metazoan cells. Proc. Roy. Soc. Lond. B 207, 129-147.
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Note: all my papers can be downloaded from:
http://www.math.ucdavis.edu/~mogilner/Mitosis.html
http://www.math.ucdavis.edu/~mogilner/CellMov.html
http://www.math.ucdavis.edu/~mogilner/Patterns.html
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Rippling in Myxobacteria:
Our paper and movies are at:
http://www.math.ucdavis.edu/~mogilner/Patterns.html
Mathematical model that I cannot understand is:
Frithjof Lutscher and Angela Stevens
Emerging patterns in a hyperbolic model for locally interacting
cell systems.
Journal of Nonlinear Science (2002), Vol. 12, No. 6, 619-640.
Cell Automata model:
Uwe Borner, Andreas Deutsch, Hans Reichenbach and Markus Bar
Rippling patterns in aggregates of myxobacteria
arise from cell-cell collisions
Phys. Rev. Lett. 89, #7 pp 078101-1 - 078101-4 (2002)
(see pdf file RipplingCM)
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Angular order in actin network:
Edelstein-Keshet, L., G.B. Ermentrout (1990) Models for contact
mediated pattern formation: cells that form parallel arrays,
J. Math. Biol. 29: 33-58.
Civelecoglu, G. and Edelstein-Keshet, L. (1994) Modelling the
dynamics of F-Actin in the cell,
Bull. Math. Biol. 56 (4), 587-616.
Maly IV, Borisy GG. Self-organization of a propulsive actin
network as an evolutionary process.
Proc Natl Acad Sci U S A. 2001 98 (20), 11324-11329.
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