University of Minnesota
University of Minnesota
http://www.umn.edu/
IMA Web

Materials from

2003 New Directions Short Course

June 16-27, 2003

Group Photos

Lecturers:

James P. Keener (University of Utah)
Slides for the Introduction on 6/16/2003:   html
Slides for Cell Homeostasis on 6/17/2003:  html
Slides for Generic Calcium Model on 6/19/2003:   html
Slides for Cell Cycle on 6/20/2003:   html
Slides for the Dynamics of Growing Biofilm on 6/23/2003:   html
html    pdf    ps    ppt
The Onset of Fibrillation following a Heart Attack

Calcium Dynamics
Basic reference: Keener and Sneyd, Mathematical Physiology
Slides:   html    pdf    ps    ppt

Control of Cell Volume and Membrane Potential
Basic reference: Keener and Sneyd, Mathematical Physiology
Slides:   html    pdf    ps    ppt

Alexander Mogilner (University of California at Davis)
Bacterial chemotaxis
Molecular motors I
Molecular motors II
Muscle Contraction
Physics of Biological Gels
Cell Migration
Neutrofil Chemotaxis
Literature.txt
CB_Review.pdf
RipplingCM.pdf
Pollard1.avi
extract.mov
kerat.mov
KuoRatch1.mov
KuoRatch2.mov
KuoRatch3.mov
KuoRatch4.mov
KuoRatch5.mov
PtK2Lm.mov
mitosis.exe

Cliff Ragsdale (The University of Chicago)    
Paper:  AgarwalaS'01.pdf   Background Info:   WolpertTIGS'96.pdf

Robert Sheaff (University of Minnesota Cancer Center) 
Slides:   html    pdf    ps    ppt

Ronald A. Siegel (University of Minnesota) Controlled Drug Delivery
Slides:   html    pdf    ps    ppt

Report on Lac Operon
John W. Dold
UMIST
Slide:   html
Donald French
University of Cincinnati
Oscillatory Behavior in E. Coli During Lactose Utilization
Slides:
  html
Wilhelm Huisinga
Free Institute (FU) Berlin
Cell Cycle Control
Slides:   html
Edwin Tecarro
UT M.D. Anderson Cancer Center
Graphs:   fig.llb.pdf    fig.llb.ps
oderun.pdf    oderun.jpg    oderun.fig
Anthony Tongen
Trinity International University
Slides:   html
Report on Vibrio Vulnificus
Group Report:
Steven Buechler
(University of Notre Dame)
John W. Dold

UMIST
Yixin Guo
University of Pittsburgh
Seth F. Oppenheimer
Mississippi State University
Janos Turi
University of Texas-Dallas
Li Wu
University of Rhode Island

 A Simple Population Model for Vibrio Vulnificus in a Well Mixed Circulatory System
Slides:   pdf

Matlab Animations:
imaex1.mat (84MB)
imaex2.mat (45MB)

Report on Calcium Homeostasis
Full Report by
Alex Himonas
University of Notre Dame
Brynja Kohler
University of Utah

Brian Martensen
University of Texas at Austin
Trygve Nilssen
Simula Research Laboratory
Bjorn Sandstede

Ohio State University
Milena Stanislavova
University of Kansas
 
Slides:   html
Brynja Kohler
University of Utah

Regulatory T Cells
Slides:   pdf
Brian Martensen
University of Texas at Austin
Milena Stanislavova

University of Kansas
Cardiac Calcium Dynamics
Slides:   html    pdf    ps    ppt
Additional references for the Calcium Homeostasis problem
Report on Intercellular Ephaptic Coupling
Yuncheng You
University of South Florida
Paul E. Castillo
Lawrence Livermore National Laboratory
Christopher Elmer
Lawrence Livermore National Laboratory
Frank Lynch
University of Utah
Slides:   html
Report on Protein Folding
J. Maurice Rojas
Texas A&M University
Ming Zhang
University of Texas
MD Anderson Cancer Center

Conformational Search Using Real Algebraic Geometry
Slides:   pdf

Conformational Search Using Algebraic Geometry
Slides:   html    pdf    ps    ppt

Example System of Polynomial Equations   pdf

2003 New Directions Short Course, June 16-27, 2003

Group Photos

Probability and Statistics in Complex Systems: Genomics, Networks, and Financial Engineering, September 1, 2003 - June 30, 2004