Thursday, May 1, 2008
| 2:00p-3:00p | Peter R. Kramer, Rensselaer Polytechnic Institute Prescribing thermal forcing for physical systems |
Lind Hall 409 | WS-STM |
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Tuesday, May 6, 2008
| 11:15a-12:15p | Peter Hinow, University of Minnesota A model for transfer phenomena in structured populations |
Lind Hall 409 | PS |
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Wednesday, May 7, 2008
| 11:15a-12:15p | Claudio Altafini, International School for Advanced Studies (SISSA/ISAS) Modeling the genome-wide transient response to stimuli in yeast: adaptation through integral feedback |
Lind Hall 409 | MMCB |
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Sunday, May 11, 2008
| All Day | Introductory lectures
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SW5.11-13.08 | |
|---|---|---|---|
| 12:00p-1:00p | Registration and coffee
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EE/CS 3-176 | SW5.11-13.08 |
| 1:00p-1:15p | Chehrzad Shakiban, University of Minnesota Welcome and introduction |
EE/CS 3-180 | SW5.11-13.08 |
| 1:15p-2:15p | Michael C. Reed, Duke University Stochastic analysis is the fundamental tool for understanding biological function |
EE/CS 3-180 | SW5.11-13.08 |
| 2:15p-2:30p | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
| 2:30p-3:30p | John Yin, University of Wisconsin Intracellular models and single-cell measures of virus growth |
EE/CS 3-180 | SW5.11-13.08 |
| 3:30p-4:00p | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
| 4:00p-5:00p | Thomas G. Kurtz, University of Wisconsin Analyzing stochastic models |
EE/CS 3-180 | SW5.11-13.08 |
| 5:00p-5:30p | Second chances
|
EE/CS 3-180 | SW5.11-13.08 |
| 6:30p-8:30p | Workshop dinner
|
Caspian Bistro 2418 University Ave SE Minneapolis, MN 55414 612-623-1133 |
SW5.11-13.08 |
Monday, May 12, 2008
| 8:30a-9:00a | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
|---|---|---|---|
| 9:00a-10:00a | Peter Swain, McGill University Modelling stochastic gene expression |
EE/CS 3-180 | SW5.11-13.08 |
| 10:00a-10:30a | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
| 10:30a-11:30a | Johan Paulsson, Harvard Medical School Fundamental limits on the suppression of randomness in biology |
EE/CS 3-180 | SW5.11-13.08 |
| 11:30a-1:15p | Lunch
|
EE/CS 3-176 | SW5.11-13.08 |
| 1:15p-2:45p | Peter W. Glynn, Stanford University;
Peter Haas, IBM Research Division An introduction to discrete-event simulation |
EE/CS 3-180 | SW5.11-13.08 |
| 2:45p-3:15p | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
| 3:15p-3:45p | Gheorghe Craciun, University of Wisconsin Part I: Local and global stability of biochemical reaction network dynamics |
EE/CS 3-180 | SW5.11-13.08 |
| 3:50p-4:20p | Ruth J. Williams, University of California, San Diego Part II: Homotopy methods for counting reaction network equilibria |
EE/CS 3-180 | SW5.11-13.08 |
| 4:20p-4:50p | Second chances
|
EE/CS 3-180 | SW5.11-13.08 |
| 4:50p-5:00p | Group photo
|
SW5.11-13.08 | |
| 5:00p-6:30p | Reception and Poster Session
|
Lind Hall 400 | SW5.11-13.08 |
| Yiannis N. Kaznessis, University of Minnesota: Stochastic models for intracellular reaction networks | |||
| Mónica F. Bugallo, SUNY; Petar M. Djuric, SUNY: Solutions to inverse problems of biochemical networks using stochastic methods | |||
| Melissa Vellela, University of Washington: Stochastic modeling of bistable chemical systems: Schlogl's model | |||
| David F. Anderson, University of Wisconsin: Product form stationary distributions for deficiency zero chemical reaction networks | |||
| Hye-Won Kang, University of Wisconsin: Multiscale methods in a heat shock response model | |||
| Kyung Hyuk Kim, University of Washington: Stochastic control analysis for biological reaction systems | |||
| Anilkumar Devarapu, University of Louisville: Stochastic simulations of reaction-diffusion models | |||
| Ioana Cipcigan, University of Maryland Baltimore County; Muruhan Rathinam, University of Maryland Baltimore County: Interlaced Euler scheme for stiff stochastic differential equations | |||
| Rishi Srivastava, University of Wisconsin: Stochastic modeling of vesicular stomatitis virus(VSV) growth in cells: An application of order statistics to predict replication delays | |||
| Arnab Ganguly, University of Wisconsin: Simulating discrete biochemical reaction systems |
Tuesday, May 13, 2008
| 8:15a-8:45a | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
|---|---|---|---|
| 8:45a-9:45a | Lev S. Tsimring, University of California, San Diego Stochastic oscillations in small genetic networks |
EE/CS 3-180 | SW5.11-13.08 |
| 9:45a-10:45a | Yiannis N. Kaznessis, University of Minnesota Multiscale models for synthetic biology |
EE/CS 3-180 | SW5.11-13.08 |
| 10:45a-11:15a | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
| 11:15a-12:15p | Samuel Kou, Harvard University Subdiffusion and reaction networks in biophysics |
EE/CS 3-180 | SW5.11-13.08 |
| 12:15p-1:45p | Lunch
|
EE/CS 3-180 | SW5.11-13.08 |
| 1:45p-2:45p | Darren James Wilkinson, University of Newcastle upon Tyne Bayesian inference for stochastic intracellular reaction network models |
EE/CS 3-180 | SW5.11-13.08 |
| 2:45p-3:15p | Grzegorz A Rempala, University of Louisville Inferring an underlying reaction network from the data |
EE/CS 3-180 | SW5.11-13.08 |
| 3:15p-3:45p | Coffee
|
EE/CS 3-176 | SW5.11-13.08 |
| 3:45p-4:15p | Second chances
|
EE/CS 3-180 | SW5.11-13.08 |
| 4:15p-5:15p | James C. Liao, University of California Metabolic engineering and metabolic modeling: where do we go from here? |
EE/CS 3-180 | SW5.11-13.08 |
Wednesday, May 14, 2008
| 11:15a-12:15p | Howard A. Levine, Iowa State University Some mathematical issues arising in single and multiple target SELEX |
Lind Hall 409 | MMCB |
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Tuesday, May 20, 2008
| 11:15a-12:15p | Duncan Clarke (Univeristy of Minnesota) TBA
|
Lind Hall 409 | PS |
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Wednesday, May 21, 2008
| 11:15a-12:15p | Sergei Fedotov, University of Manchester Anomalous diffusion, tumor growth and random walk models |
Lind Hall 409 | MMCB |
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Monday, May 26, 2008
| All Day | Memorial Day. The IMA is closed.
|
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Tuesday, May 27, 2008
| 8:15a-9:00a | Registration and coffee
|
EE/CS 3-176 | W5.27-30.08 |
|---|---|---|---|
| 9:00a-9:15a | Douglas N. Arnold, University of Minnesota Welcome to the IMA |
EE/CS 3-180 | W5.27-30.08 |
| 9:15a-10:05a | Rick Horwitz, University of Virginia Actin and a-actinin orchestrate the assembly and maturation of nascent adhesions in a myosin II motor independent manner |
EE/CS 3-180 | W5.27-30.08 |
| 10:05a-10:35a | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
| 10:35a-11:25a | Tobias Meyer, Stanford University TBA |
EE/CS 3-180 | W5.27-30.08 |
| 11:25a-2:00a | Lunch
|
W5.27-30.08 | |
| 2:00p-2:50p | Ken Jacobson, University of North Carolina New methods to study motile phenomena |
EE/CS 3-180 | W5.27-30.08 |
| 2:50p-3:05p | Group Photo
|
W5.27-30.08 | |
| 3:05p-3:35p | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
| 3:35p-4:25p | Michael Kozlov, Tel Aviv University TBA |
EE/CS 3-180 | W5.27-30.08 |
| 4:30p-6:30p | Reception and Poster Session
|
Lind Hall 400 | W5.27-30.08 |
| Dirk Hartmann, Ruprecht-Karls-Universität Heidelberg: Mathematical and computational tools for cell-mechanobiology |
Wednesday, May 28, 2008
| 8:30a-9:00a | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
|---|---|---|---|
| 9:00a-9:50a | Alissa Weaver, Vanderbilt University TBA |
EE/CS 3-180 | W5.27-30.08 |
| 9:55a-10:45a | Anders E Carlsson, Washington University Effects of nonequilibrium processes on actin dynamics and force generation |
EE/CS 3-180 | W5.27-30.08 |
| 10:45a-11:15a | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
| 11:15a-12:05p | Denise Montell, Johns Hopkins University TBA |
EE/CS 3-180 | W5.27-30.08 |
| 12:05p-2:00p | Lunch
|
W5.27-30.08 | |
| 2:00p-2:50p | Yu-li Wang, University of Massachusetts Medical School, Worcester Campus Adherent cells as a mechanical device - probing the forces and understanding the regulatory circuit |
EE/CS 3-180 | W5.27-30.08 |
| 2:55p-3:45p | Micah Dembo, Boston University TBA |
EE/CS 3-180 | W5.27-30.08 |
| 3:45p-4:15p | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
| 4:15p-4:45p | Second Chances
|
EE/CS 3-180 | W5.27-30.08 |
| 7:00p-8:00p | Informal sessions (for people who have energy and will to present and discuss some narrower topics. That would be self-organized, like 2nd chances).
|
EE/CS 3-180 | W5.27-30.08 |
Thursday, May 29, 2008
| 8:30a-9:00a | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
|---|---|---|---|
| 9:00a-9:50a | Carole Parent, National Cancer Institute TBA |
EE/CS 3-180 | W5.27-30.08 |
| 9:55a-10:45a | Pablo A. Iglesias, Johns Hopkins University TBA |
EE/CS 3-180 | W5.27-30.08 |
| 10:45a-11:15a | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
| 11:15a-12:05p | John S. Condeelis, Albert Einstein College of Medicine Novel signal pathways in tumor cell chemotaxis |
EE/CS 3-180 | W5.27-30.08 |
| 12:05p-2:00p | Lunch
|
W5.27-30.08 | |
| 2:00p-2:50p | Cornelius Weijer, University of Dundee TBA |
EE/CS 3-180 | W5.27-30.08 |
| 2:55p-3:45p | Leah Edelstein-Keshet, University of British Columbia Biochemical regulation of cell polarization and actin-based cell motility |
EE/CS 3-180 | W5.27-30.08 |
| 3:45p-4:15p | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
| 4:15p-4:45p | Second Chances
|
EE/CS 3-180 | W5.27-30.08 |
| 6:30p-8:30p | Workshop dinner
|
W5.27-30.08 |
Friday, May 30, 2008
| 8:30a-9:00a | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
|---|---|---|---|
| 9:00a-9:50a | John Sandy Parkinson, University of Utah TBA |
EE/CS 3-180 | W5.27-30.08 |
| 9:55a-10:45a | Dennis Bray, University of Cambridge The chemotaxis receptor cluster revisited |
EE/CS 3-180 | W5.27-30.08 |
| 10:45a-11:15a | Coffee
|
EE/CS 3-176 | W5.27-30.08 |
| 11:15a-12:05p | Philippe Cluzel, University of Chicago Inferring cellular response to a small stimulus from noise measurements in non-stimulated cells |
EE/CS 3-180 | W5.27-30.08 |
| 12:05p-2:00p | Lunch
|
W5.27-30.08 | |
| 2:00p-2:50p | Yuhai Tu, IBM From molecule to behavior: E. coli’s memory, computation and taxis |
EE/CS 3-180 | W5.27-30.08 |
| 2:55p-3:25p | Second Chances + Closing Discussion
|
EE/CS 3-180 | W5.27-30.08 |
Legend: |
MMCB: Mathematics of Molecular and Cellular Biology Seminar; PS: IMA Postdoc Seminar; SW5.11-13.08: Stochastic Models for Intracellular Reaction Networks; W5.27-30.08: Quantitative Approaches to Cell Motility and Chemotaxis; WS-STM: Working seminar — Stochastic techniques in microbiology; |