Institute for Mathematics and its Applications

University of Minnesota

400 Lind Hall

207 Church Street S.E.

Minneapolis, Minnesota 55455

Web: http://www.ima.umn.edu | Email: staff@ima.umn.edu | Telephone: (612) 624-6066 | Fax: (612) 626-7370
Schedules available at http://www.ima.umn.edu/happening

Events:

W2.13-17.12: Group Testing Designs, Algorithms, and Applications to Biology;

Sunday, February 12, 2012

No events scheduled.

Monday, February 13, 2012

9:00am-9:45am Coffee and Registration

Keller Hall 3-176 W2.13-17.12
9:45am-10:00am Welcome and Introduction

Keller Hall 3-180 W2.13-17.12
10:00am-11:00am Yaniv Erlich, Whitehead Institute for Biomedical Research
Tutorial: Cost effective sequencing of rare genetic variations

Keller Hall 3-180 W2.13-17.12
11:00am-11:15am Break

Keller Hall 3-176 W2.13-17.12
11:15am-12:15pm Anna Gilbert, University of Michigan
Tutorial: Sparse signal recovery

Keller Hall 3-180 W2.13-17.12
12:15pm-2:00pm Lunch

W2.13-17.12
2:00pm-3:00pm Noam Shental, Open University of Israel
Identification of rare alleles and their carriers using compressed se(que)nsing

Keller Hall 3-180 W2.13-17.12
3:00pm-3:15pm Break

Keller Hall 3-176 W2.13-17.12
3:15pm-3:45pm Dina Esposito, Whitehead Institute for Biomedical Research
Mining Rare Human Variations using Combinatorial Pooling

Keller Hall 3-180 W2.13-17.12
3:45pm-4:45pm Sharon Aviran, University of California, Berkeley
RNA Structure Characterization from High-Throughput Chemical Mapping Experiments

Keller Hall 3-180 W2.13-17.12
4:45pm-5:30pm Olgica Milenkovic, University of Illinois at Urbana-Champaign
RUMP session

Keller Hall 3-180 W2.13-17.12
6:30pm-8:00pm Social Hour at the Campus Club
403 Coffman Memorial Union Map

Campus Club W2.13-17.12

Tuesday, February 14, 2012

8:30am-9:00am Coffee

Keller Hall 3-176 W2.13-17.12
9:00am-10:00am Atri Rudra, University at Buffalo (SUNY)
Tutorial: Group Testing and Coding Theory

Keller Hall 3-180 W2.13-17.12
10:00am-10:15am Group Photo

Keller Hall 3-180 W2.13-17.12
10:15am-11:15am Natasha Przulj, Imperial College London
Network topology as a source of biological information

Keller Hall 3-180 W2.13-17.12
11:15am-11:30am Break

Keller Hall 3-176 W2.13-17.12
11:30am-12:30pm Vyacheslav V. Rykov, University of Nebraska
Superimposed Codes and Designs for Group Testing Models

Keller Hall 3-180 W2.13-17.12
12:30pm-2:00pm Lunch

W2.13-17.12
2:00pm-3:00pm Alex Samorodnitsky, Hebrew University
Testing Boolean functions

Keller Hall 3-180 W2.13-17.12
3:00pm-3:15pm Coffee Break

Keller Hall 3-176 W2.13-17.12
3:15pm-3:45pm Stefano Lonardi, University of California, Riverside
Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space

Keller Hall 3-180 W2.13-17.12
3:45pm-4:15pm Zoltan Furedi, Hungarian Academy of Sciences (MTA)
Superimposed codes

Keller Hall 3-180 W2.13-17.12
4:15pm-5:30pm Poster Session and Reception

Lind Hall 400 W2.13-17.12
Christian Deppe, Universität Bielefeld:
  Poster - Finding one of m defective elements
Ding-Zhu Du, University of Texas:
  Poster - Approximation for Nonunique Probe Selection
Julio Duarte, University of Minnesota:
  Poster - Hierarchical topological network analysis of anatomical human brain connectivity and differences related to sex and kinship.
Mikhail B Malyutov, Northeastern University:
  Poster - Upgraded Separate Testing of Inputs in Compressive Sensing

Wednesday, February 15, 2012

8:30am-9:00am Coffee

Keller Hall 3-176 W2.13-17.12
9:00am-10:00am Nicolas Thierry-Mieg, Centre National de la Recherche Scientifique (CNRS)
Shifted Transversal Design Smart-pooling: increasing sensitivity, specificity and efficiency in high-throughput biology

Keller Hall 3-180 W2.13-17.12
10:00am-10:15am Break

Keller Hall 3-176 W2.13-17.12
10:15am-11:15am Sriram Sankararaman, Harvard Medical School
Genomic Privacy and the Limits of Individual Detection in a Pool

Keller Hall 3-180 W2.13-17.12
11:15am-11:30am Break

Keller Hall 3-176 W2.13-17.12
11:30am-12:00pm David Golan, Tel Aviv University
Weighted Pooling - Simple and Effective Techniques for Pooled High Throughput Sequencing Design

Keller Hall 3-180 W2.13-17.12
12:00pm-2:00pm Lunch

W2.13-17.12
2:00pm-3:00pm Ferdinando Cicalese, Università di Salerno
Competitive Testing for Evaluating Priced Functions

Keller Hall 3-180 W2.13-17.12
3:00pm-3:15pm Coffee Break

Keller Hall 3-176 W2.13-17.12
3:15pm-3:45pm Olgica Milenkovic, University of Illinois at Urbana-Champaign
Probabilistic and combinatorial models for quantized group testing

Keller Hall 3-180 W2.13-17.12
3:45pm-4:15pm Mahdi Cheraghchi, Carnegie Mellon University
Improved Constructions for Non-adaptive Threshold Group Testing

Keller Hall 3-180 W2.13-17.12
4:15pm-4:30pm Break

W2.13-17.12
4:30pm-5:30pm Yaniv Erlich, Whitehead Institute for Biomedical Research
RUMP session

Keller Hall 3-180 W2.13-17.12

Thursday, February 16, 2012

8:30am-9:00am Coffee

Keller Hall 3-176 W2.13-17.12
9:00am-10:00am David P. Woodruff, IBM Research Division
Tutorial: The Data Stream Model

Keller Hall 3-180 W2.13-17.12
10:00am-10:15am Break

Keller Hall 3-176 W2.13-17.12
10:15am-11:15am Jelani Nelson, Princeton University
Sparser Johnson-Lindenstrauss Transforms

Keller Hall 3-180 W2.13-17.12
11:15am-11:30am Break

W2.13-17.12
11:30am-12:30pm Amihood Amir, Bar-Ilan University
Length Reduction via Polynomials

Keller Hall 3-180 W2.13-17.12
12:30pm-2:00pm Lunch

W2.13-17.12
2:00pm-3:00pm Annalisa De Bonis, Università di Salerno
A Group Testing Approach to Corruption Localizing Hashing

Keller Hall 3-180 W2.13-17.12
3:00pm-3:15pm Break

Keller Hall 3-176 W2.13-17.12
3:15pm-3:45pm Mikhail B Malyutov, Northeastern University
Greedy Separate Testing Sparse Inputs

Keller Hall 3-180 W2.13-17.12
3:45pm-4:15pm Sylvie Ricard-Blum, Université Claude-Bernard (Lyon I)
A dynamic and quantitative protein interaction network regulating angiogenesis

Keller Hall 3-180 W2.13-17.12
4:15pm-4:30pm Break

Keller Hall 3-176 W2.13-17.12
4:30pm-5:30pm Ely Porat, Bar-Ilan University
RUMP session

Keller Hall 3-180 W2.13-17.12

Friday, February 17, 2012

8:30am-9:00am Coffee

Keller Hall 3-176 W2.13-17.12
9:00am-10:00am Anna Gal, University of Texas at Austin
Streaming algorithms for approximating the length of the longest increasing subsequence

Keller Hall 3-180 W2.13-17.12
10:00am-10:15am Break

Keller Hall 3-176 W2.13-17.12
10:15am-11:15am Alexander Schliep, Rutgers University
From screening clone libraries to detecting biological agents

Keller Hall 3-180 W2.13-17.12
11:15am-11:30am Break

Keller Hall 3-176 W2.13-17.12
11:30am-12:30pm Or Zuk, Broad Institute
Reconstruction of bacterial communities using sparse representation

Keller Hall 3-180 W2.13-17.12

Saturday, February 18, 2012

No events scheduled.

Legend:

W2.13-17.12: Group Testing Designs, Algorithms, and Applications to Biology;

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