Talk
Abstract:
Multi-scale Quantum Models for Biological Systems
Darrin
M. York
Department of Chemistry
University of Minnesota
Minneapolis, MN 55455 USA
http://www.chem.umn.edu/groups/york/york.html
york@chem.umn.edu
The development of accurate, computationally tractable methods
to model complex molecular systems is a fundamental goal of
modern theoretical chemistry. High-level quantum mechanical
methods are often very reliable; however, the compute-intensive
nature of the calculations severely limits the range of applications.
Alternately, simple empirical models frequently lack sufficient
accuracy (or transferability) to be predictive for chemical
events such as ionic interactions or formation/cleavage of chemical
bonds.
This talk will outline some recent developments toward the improvement
of chemical models by the design of 1) algorithms to remove
scaling bottlenecks in the calculation of the electronic structure
and classical electrostatic problems, and 2) new force field
models that include quantum mechanical many-body effects. Topics
include methods to circumvent the cubic or higher scaling bottleneck
of single-determinant wave function theories [1], new methods
for improved accuracy in linear-scaling Ewald and solvation
techniques [2], and a density-functional based many-body force
field model for molecular simulations [2]. Preliminary applications
of some of the methods to proteins and DNA in solution will
be presented.
[1] J. Khandogin, A. Hu & D. York, J. Comput. Chem., in press;
D. York et al., Phys. Rev. Lett.
v89, 5011 (1998);
D. York, in Combined Quantum Mechanical
and Molecular Mechanical Methods, ACS Symp. Ser. (J. Gao M.
Thompson, Eds.), Ch. 18, p275 (1998);
D. York et al., J. Am. Chem. Soc.
v118, 10940 (1996);
T.-S. Lee et al., J. Chem. Phys.
v105, 2744 (1996).
[2] D. York and M. Karplus, J. Phys. Chem. A v103, p11060 (1999);
D. York, T.-S. Lee and W. Yang
Chem. Phys. Lett. v263, p297 (1996).
[3] D. York & W. Yang, J. Chem. Phys. v104, 159 (1996);
D. York, Int. J. Quant. Chem.
QCS29, p385 (1995).
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