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HOME » PROGRAMS/ACTIVITIES » Annual Thematic Program
| Robert B. Bourret | Microbiology and Immunology, University of North Carolina |
| Julie A. Theriot | Biochemistry, Stanford University |
| Alex Mogilner | Mathematics/Neurobiology, Physiology and Behavio, University of California, Davis |
Mathematical modeling and computer simulations have been used recently as complementary tools in cell biological and biophysical research of cell motility with an astonishing frequency. The quantitative models test feasibility of proposed qualitative molecular mechanisms of motility and generate novel hypotheses to be tested in future experiments. The workshop will focus on various quantitative models of cell crawling and such its aspects as actin based protrusion, myosin driven contraction, dynamic adhesion, and biochemical regulation of motility. Also, models of chemotaxis in both eukaryotic cells and bacteria will be discussed. Not only detailed physico-chemical models employing differential equations and large scale stochastic simulations will be presented, but also causal, Boolean networks, Bayesian models, etc., will be discussed. Modeling talks will be paired with reviews of experimental data and short tutorials on computational techniques. We will discuss the tantalizing possibility of complete theoretical understanding of mechanochemical integration of the processes of protrusion, adhesion, contraction, lf-polarization and direction sensing into cell migration cycle.
Speakers and audience will be a mix of mathematicians, biologists, physicists and engineers including young people interested in work at the math/bio interface.
| Tuesday | Wednesday | Thursday | Friday | |||||||||
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| Tuesday May 27, 2008 | |||||||||
| 8:15am-9:00am | Registration and coffee | EE/CS 3-176 | |||||||
| 9:00am-9:15am | Welcome to the IMA | Douglas Arnold (University of Minnesota) | EE/CS 3-180 | ||||||
| 9:15am-10:05am | Actin and a-actinin orchestrate the assembly and maturation of nascent adhesions in a myosin II motor independent manner | Rick Horwitz (University of Virginia) | EE/CS 3-180 | ||||||
| 10:05am-10:35am | Coffee | EE/CS 3-176 | |||||||
| 10:35am-11:25am | Modular control of growth factor triggered by endothelial sheet migration | Tobias Meyer (Stanford University) | EE/CS 3-180 | ||||||
| 11:25am-2:00am | Lunch | ||||||||
| 2:00pm-2:50pm | New methods to study motile phenomena | Ken Jacobson (University of North Carolina) | EE/CS 3-180 | ||||||
| 2:50pm-3:05pm | Group Photo | ||||||||
| 3:05pm-3:35pm | Coffee | EE/CS 3-176 | |||||||
| 3:35pm-4:25pm | Actin organization at the cell edge: mechanism for formation of lamellipodium -lamellum interface | Michael Kozlov (Tel Aviv University) | EE/CS 3-180 | ||||||
| 4:30pm-6:30pm | Lind Hall 400 | ||||||||
| Wednesday May 28, 2008 | |||||||||
| 8:30am-9:00am | Coffee | EE/CS 3-176 | |||||||
| 9:00am-9:50am | Computational modeling of invadopodia-ECM interactions | Alissa Weaver (Vanderbilt University) | EE/CS 3-180 | ||||||
| 9:55am-10:45am | Effects of nonequilibrium processes on actin dynamics and force generation | Anders Carlsson (Washington University) | EE/CS 3-180 | ||||||
| 10:45am-11:15am | Coffee | EE/CS 3-176 | |||||||
| 11:15am-12:05pm | Developmental regulation of cell motility | Denise Montell (Johns Hopkins University) | EE/CS 3-180 | ||||||
| 12:05pm-2:00pm | Lunch | ||||||||
| 2:00pm-2:50pm | Adherent cells as a mechanical device - probing the forces and understanding the regulatory circuit | Yu-li Wang (University of Massachusetts Medical School, Worcester Campus) | EE/CS 3-180 | ||||||
| 2:55pm-3:45pm | Analysis of actin FLAP dynamics in the Leading lamella | Micah Dembo (Boston University) | EE/CS 3-180 | ||||||
| 3:45pm-4:15pm | Coffee | EE/CS 3-176 | |||||||
| 4:15pm-4:45pm | Second Chances | EE/CS 3-180 | |||||||
| 7:00pm-8:00pm | Larger group (Lind Hall 409); Smaller group (Lind Hall 401)
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| 7:00pm-8:00pm | Larger group (Lind Hall 409); Smaller group (Lind Hall 401)
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| Thursday May 29, 2008 | |||||||||
| 8:30am-9:00am | Coffee | EE/CS 3-176 | |||||||
| 9:00am-9:50am | Signal propagation during chemotaxis | Erin Rericha (University of Maryland) | EE/CS 3-180 | ||||||
| 9:55am-10:45am | Modeling chemotactic gradient sensing, polarization and motility in Dictyostelium discoideum | Pablo Iglesias (Johns Hopkins University) | EE/CS 3-180 | ||||||
| 10:45am-11:15am | Coffee | EE/CS 3-176 | |||||||
| 11:15am-12:05pm | Novel signal pathways in tumor cell chemotaxis | John Condeelis (Albert Einstein College of Medicine) | EE/CS 3-180 | ||||||
| 12:05pm-2:00pm | Lunch | ||||||||
| 2:00pm-2:50pm | Chemotactic cell movement during Dictyostelium development and chick gastrulation | Cornelius Weijer (University of Dundee) | EE/CS 3-180 | ||||||
| 2:55pm-3:45pm | Biochemical regulation of cell polarization and actin-based cell motility | Leah Edelstein-Keshet (University of British Columbia) | EE/CS 3-180 | ||||||
| 3:45pm-4:15pm | Coffee | EE/CS 3-176 | |||||||
| 4:15pm-4:45pm | Second Chances | EE/CS 3-180 | |||||||
| 6:30pm-8:30pm | Workshop dinner at Pagoda in Dinkytown | Pagoda 1417 4th St. SE Minneapolis, MN 612-378-4710 | |||||||
| Friday May 30, 2008 | |||||||||
| 8:30am-9:00am | Coffee | EE/CS 3-176 | |||||||
| 9:00am-9:50am | Bacterial chemotaxis: Sophisticated behavior from simple circuitry | John Parkinson (University of Utah) | EE/CS 3-180 | ||||||
| 9:55am-10:45am | The chemotaxis receptor cluster revisited | Dennis Bray (University of Cambridge) | EE/CS 3-180 | ||||||
| 10:45am-11:15am | Coffee | EE/CS 3-176 | |||||||
| 11:15am-12:05pm | Inferring cellular response to a small stimulus from noise measurements in non-stimulated cells | Philippe Cluzel (University of Chicago) | EE/CS 3-180 | ||||||
| 12:05pm-2:00pm | Lunch | ||||||||
| 2:00pm-2:50pm | From molecule to behavior: E. coli’s memory, computation and taxis | Yuhai Tu (IBM) | EE/CS 3-180 | ||||||
| 2:55pm-3:25pm | Second Chances + Closing Discussion | EE/CS 3-180 | |||||||
| NAME | DEPARTMENT | AFFILIATION |
|---|---|---|
| Jonathan Alberts | Center for Cell Dynamics | University of Washington |
| Douglas Arnold | Institute for Mathematics and its Applications | University of Minnesota |
| Paul Atzberger | Department of Mathematics and Department of Mechanical Engineering | University of California, Santa Barbara |
| Daniel Bates | Institute for Mathematics and its Applications | University of Minnesota |
| Banu Baydil | Department of Mathematical Sciences | Rensselaer Polytechnic Institute |
| Yermal Bhat | Institute for Mathematics and its Applications | University of Minnesota |
| Tracy Bibelnieks | Department of Mathematics | Augsburg College |
| Khalid Boushaba | Department of Mathematics | Iowa State University |
| Dennis Bray | Department of Physiology, Development and Neuroscience | University of Cambridge |
| Maria-Carme Calderer | School of Mathematics | University of Minnesota |
| Hannah Callender | Institute for Mathematics and its Applications | University of Minnesota |
| Yang Cao | Department of Computer Science | Virginia Polytechnic Institute and State University |
| Anders Carlsson | Department of Physics | Washington University |
| Gregory Chirikjian | Department of Mechanical Engineering | Johns Hopkins University |
| Yung-Sze Choi | Department of Mathematics | University of Connecticut |
| Philippe Cluzel | Center for Integrative Sciences Building | University of Chicago |
| John Condeelis | Department of Anatomy & Structural Biology | Albert Einstein College of Medicine |
| Ludovica Cotta-Ramusino | Institute for Mathematics and its Applications | University of Minnesota |
| Gaudenz Danuser | Department of Cell Biology | Scripps Research Institute |
| Lance Davidson | Department of Bioengineering | University of Pittsburgh |
| Adriana Dawes | Center for Cell Dynamics | University of Washington |
| Micah Dembo | Department of Biomedical Engineering | Boston University |
| Aleksey Demtchouk | BMEN | University of Minnesota |
| Rich Dickinson | Chemical Engineering Department | University of Florida |
| Kequan Ding | Chinese Academy of Sciences | |
| Leah Edelstein-Keshet | Department of Mathematics | University of British Columbia |
| Martin Falcke | Department of Theoretical Physics | Hahn-Meitner-Institut für Kernforschung (Nuclear Research) Berlin GmbH |
| Sergei Fedotov | School of Mathematics | University of Manchester |
| Daniel Fletcher | University of California, Berkeley | |
| Christodoulos Floudas | Department of Chemical Engineering | Princeton University |
| Henrik Flyvbjerg | Department of Micro- and Nanotechnology | Technical University of Denmark |
| Margaret Gardel | University of Chicago | |
| Melissa Gardner | Biomedical Engineering Department | University of Minnesota |
| Nir Gov | Chemical Physics Department | Weizmann Institute of Science |
| Jason Gower | Institute for Mathematics and its Applications | University of Minnesota |
| Robert Guy | Department of Mathematics | University of California, Davis |
| Esfandiar Haghverdi | School of Informatics | Indiana University |
| Mark Harris | Department of Cancer Biology | Vanderbilt University |
| Dirk Hartmann | Interdisciplinary Center for Scientific Computing | Ruprecht-Karls-Universität Heidelberg |
| Thomas Hays | Department of Genetics, Cell Biology and Development | University of Minnesota |
| Gerald Hazelbauer | Department of Biochemistry | University of Missouri |
| David Heine | Corning Incorporated | |
| Milena Hering | Institute for Mathematics and its Applications | University of Minnesota |
| Peter Hinow | Institute for Mathematics and its Applications | University of Minnesota |
| Rick Horwitz | Department of Cell Biology | University of Virginia |
| Martin Howard | John Innes Centre | |
| Bo Hu | Department of Physics | Center for Theoretical Biological Physics, UCSD |
| DiAnna Hynds | Department of Biology | Texas Woman's University |
| Pablo Iglesias | Department of Electrical and Computer Engineering | Johns Hopkins University |
| Ken Jacobson | Cell and Developmental Biology Department | University of North Carolina |
| Richard James | Department of Aerospace Engineering and Mechanics | University of Minnesota |
| Imre Jánosi | Department of Physics of Complex Systems | Eötvös Loránd University (ELTE) |
| Junhwan Jeon | Vanderbilt University | |
| Tiefeng Jiang | School of Statistics | University of Minnesota |
| Eric Kim | Vanderbilt University | |
| Debra Knisley | Department of Mathematics | East Tennessee State University |
| Michael Kozlov | Sackler Faculty of Medicine | Tel Aviv University |
| Peter Kramer | Department of Mathematical Sciences | Rensselaer Polytechnic Institute |
| Daniel Kroll | Department of Physics | North Dakota State University |
| Lorene Lanier | Department of Neuroscience | University of Minnesota |
| Juan Latorre | Department of Mathematical Sciences | Rensselaer Polytechnic Institute |
| Juliet Lee | Department of Molecular & Cell Biology | University of Connecticut |
| Pilhwa Lee | Department of Mechanical Engineering | University of Colorado |
| Anton Leykin | Institute for Mathematics and its Applications | University of Minnesota |
| Karen Lipkow | Department of Biochemistry & Cambridge Systems Biology Centre | University of Cambridge |
| Wolfgang Losert | Physics IPST and IREAP | University of Maryland |
| Roger Lui | Department of Mathematical Sciences | Worcester Polytechnic Institute |
| Laura Lurati | Institute for Mathematics and its Applications | University of Minnesota |
| Dionisios Margetis | Department of Mathematics | University of Maryland |
| Bonnie Marsick | Department of Neuroscience | University of Minnesota |
| Vicenc Mendez | Department of Physics | Autonomous University of Barcelona |
| Tobias Meyer | Chemical and Systems Biology Department | Stanford University |
| Paul Milewski | Department of Mathematics | University of Wisconsin-Madison |
| Alex Mogilner | Mathematics and Neurobiology Department | University of California, Davis |
| Denise Montell | Biological Chemistry Department | Johns Hopkins University |
| Yoichiro Mori | University of British Columbia | |
| Timothy Newman | Department of Physics | Arizona State University |
| Duane Nykamp | School of Mathematics | University of Minnesota |
| David Odde | Department of Biomedical Engineering | University of Minnesota |
| James Oliver | Mathematical Institute | University of Oxford |
| Dietmar Ölz | Wolfgang Pauli Institute (Vienna) | Universität Wien |
| Hans Othmer | Department of Mathematics | University of Minnesota |
| John Parkinson | Department of Biology | University of Utah |
| Bobby Philip | Department of Mathematical Modeling and Analysis | Los Alamos National Laboratory |
| Jonathan Popko | Department of Neuroscience | University of Minnesota |
| Mary Porter | Department of Genetics, Cell Biology, and Development | University of Minnesota |
| Alka Potdar | Department of Chemical Engineering | Vanderbilt University |
| Aravind Rammohan | Department of Modeling and Simulation | Corning Incorporated |
| Chris Rao | Chemical and Biomolecular Engineering | University of Illinois at Urbana-Champaign |
| Eric Rawdon | Department of Mathematics | University of St. Thomas |
| Erin Rericha | Institute for Research in Electronics and Applied Physics | University of Maryland |
| Murti Salapaka | Department of Electrical and Computer Engineering | University of Minnesota |
| Sebastian Sandersius | Department of Physics | Arizona State University |
| Jeffery Saven | Department of Chemistry | University of Pennsylvania |
| Christian Schmeiser | Faculty of Mathematics | Universität Wien |
| Deena Schmidt | Institute for Mathematics and its Applications | University of Minnesota |
| Casey Schneider-Mizell | Department of Physics | University of Michigan |
| Sven Sewitz | Department of Chemistry | University of Cambridge |
| Chehrzad Shakiban | Institute of Mathematics and its Applications | University of Minnesota |
| Shagi-Di Shih | Department of Mathematics | University of Wyoming |
| Julie Simons | Department of Mathematics | University of Wisconsin-Madison |
| Andrew Stein | Institute for Mathematics and its Applications | University of Minnesota |
| Magdalena Stolarska | Department of Mathematics | University of St. Thomas |
| Benjamin Stottrup | Department of Physics | Augsburg College |
| Sean Sun | Department of Mechanical Engineering | Johns Hopkins University |
| Vladimir Sverak | School of Mathematics | University of Minnesota |
| Tatyana Svitkina | Department of Biology | University of Pennsylvania |
| Csilla Szabo | Department of Mathematical Sciences | Rensselaer Polytechnic Institute |
| Julie Theriot | Department of Biochemistry | Stanford University |
| Marcus Tindall | Mathematical Institute | University of Oxford |
| Mahesh Tirumkudulu | Department of Chemical Engineering | Indian Institute of Technology-Bombay |
| Margaret Titus | Department of Genetics, Cell Biology, and Development | University of Minnesota |
| Yuhai Tu | Physical Sciences Department | IBM |
| Erkan Tüzel | Institute for Mathematics and its Applications | University of Minnesota |
| K.V. Venkatesh | Department of Chemical Engineering and School of Bioscience and Bioengineering | Indian Institute of Technology-Bombay |
| Rajitha Vuppula | Department of Chemical Engineering | Indian Institute of Technology-Bombay |
| Jin Wang | Department of Chemistry, Physics and Applied Mathematics | SUNY |
| Yu-li Wang | University of Massachusetts Medical School, Worcester Campus | |
| Zhian Wang | Institute for Mathematics and its Applications | University of Minnesota |
| Alissa Weaver | Department of Cancer Biology | Vanderbilt University |
| Cornelius Weijer | Cell and Developmental Biology Department | University of Dundee |
| Hans Weinberger | School of Mathematics | University of Minnesota |
| Charles Wolgemuth | Department of Cell Biology | University of Connecticut Health Center |
| Zhijun Wu | Department of Mathematics | Iowa State University |
| Yuan Xiong | Department of Electrical and Computer Engineering | Johns Hopkins University |
| Chuan Xue | Department of Mathematics | University of Minnesota |
| Richard Yamada | Department of Mathematics | University of Michigan |
| Hongchao Zhang | Institute for Mathematics and its Applications | University of Minnesota |
| Shan Zhao | Department of Mathematics | University of Alabama |
| Xiaoming Zheng | Department of Mathematics | University of Michigan |
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