In addition to studying current engineering theories, it is also important to study the origin of design principles in the evolutionary process, a subject that is currently in its infancy. This connection will be explored in one or more workshop sessions. Also central to the premise of the workshop is the notion of convergent evolution, the extent of which will also be examined.
A new generation of theoretical biology is currently taking shape with more formal emphasis on design or engineering principles. As part of this workshop we hope to help refine the taxonomy of such principles and emphasize the roots in existing engineering disciplines.
| Schedule |
| Monday | Tuesday | Wednesday | Thursday | Friday | |
|
Monday, April 21
|
| 8:45a-9:30a |
Registration and coffee |
|
EE/CS 3-176 |
| 9:30a-9:40a |
Welcome to the IMA |
Douglas N. Arnold (University of Minnesota) |
EE/CS 3-180 |
| 9:40a-10:00a |
Introduction to the workshop |
Bud Mishra (New York University), Partha P. Mitra (Cold Spring Harbor Laboratory) |
EE/CS 3-180 |
| 10:00a-10:50a |
Tutorial on feedback control theory
|
Richard M. Murray (California Institute of Technology) |
EE/CS 3-180 |
| 10:50a-11:20a |
Coffee |
|
EE/CS 3-176 |
| 11:20a-12:00p |
Architecture: Human engineered systems
|
Richard M. Murray (California Institute of Technology) |
EE/CS 3-180 |
| 12:00p-2:00p |
Lunch |
|
|
| 2:00p-2:40p |
Architecture: Bacteria
|
John C. Doyle (California Institute of Technology) |
EE/CS 3-180 |
| 2:50p-3:30p |
Architecture: Brains |
Partha P. Mitra (Cold Spring Harbor Laboratory) |
EE/CS 3-180 |
| 3:30p-3:50p |
Coffee |
|
EE/CS 3-176 |
| 3:50p-4:20p |
Response tuning through specific feedback architectures
|
Hana El-Samad (University of California, San Francisco) |
EE/CS 3-180 |
| 4:30p-5:00p |
Circuitry, psychophysics, and electrophysiology of
touch in the rat vibrissa system
|
David Kleinfeld (University of California, San Diego) |
EE/CS 3-180 |
| 5:00p-6:30p |
Reception and Poster Session Lind Hall 400
|
|
Tuesday, April 22
|
| 9:00a-9:30a |
Coffee |
|
EE/CS 3-176 |
| 9:30a-10:10a |
Generic approach to construction of system design space
|
Michael A. Savageau (University of California, Davis) |
EE/CS 3-180 |
| 10:20a-11:00a |
Transient stochastic analysis of gene networks
|
Mustafa H. Khammash (University of California, Santa Barbara) |
EE/CS 3-180 |
| 11:00a-11:20a |
Coffee |
|
EE/CS 3-176 |
| 11:20a-12:00p |
Modeling epigenetic silencing
|
Anirvan Sengupta (Rutgers University) |
EE/CS 3-180 |
| 12:00p-2:00p |
Lunch |
|
|
| 2:00p-2:40p |
Understanding and using bacterial sensory systems
|
Antonis Papachristodoulou (University of Oxford) |
EE/CS 3-180 |
| 2:50p-3:30p |
Monotone input/output systems as a technique for modular analysis of biomolecular network dynamics
|
Eduardo D. Sontag (Rutgers University) |
EE/CS 3-180 |
| 3:30p-4:00p |
Coffee |
|
EE/CS 3-176 |
| 4:00p-4:30p |
Second chances |
|
EE/CS 3-180 |
| 4:45p-5:00p |
Workshop photo |
|
|
|
Wednesday, April 23
|
| 9:00a-9:30a |
Coffee |
|
EE/CS 3-176 |
| 9:30a-10:10a |
Design principles in the evolution of animal
communication
|
W. Tecumseh Fitch (University of St. Andrews) |
EE/CS 3-180 |
| 10:20a-11:00a |
Reverse engineering the lordosis behavior neuronal circuit
|
Donald W. Pfaff (Rockefeller University) |
EE/CS 3-180 |
| 11:00a-2:00p |
Lunch |
|
|
| 2:00p-2:40p |
Philosophy of biology: Function/design: I
|
Robert Cummins (University of Illinois at Urbana-Champaign) |
EE/CS 3-180 |
| 2:50p-3:30p |
Pluralism about function
|
Peter H. Schwartz (Indiana University Center for Bioethics and Indiana University School of Medicine) |
EE/CS 3-180 |
| 3:30p-4:00p |
Coffee |
|
EE/CS 3-176 |
| 4:00p-4:30p |
Second chances |
|
EE/CS 3-180 |
| 6:30p-8:30p |
Workshop Dinner |
|
Caspian Bistro
2418 University Ave SE
Minneapolis, MN 55414
612-623-1133 |
|
Thursday, April 24
|
| 9:00a-9:30a |
Coffee |
|
EE/CS 3-176 |
| 9:30a-10:10a |
Engineering theory of neuronal shape
|
Dmitri Chklovskii (Cold Spring Harbor Laboratory) |
EE/CS 3-180 |
| 10:20a-11:00a |
Cellular information processing in the face of promiscuity and sloppiness
|
Christopher R. Myers (Cornell University) |
EE/CS 3-180 |
| 11:00a-11:20a |
Coffee |
|
EE/CS 3-176 |
| 11:20a-12:00p |
Design principles in synthetic biology
|
Chris J. Myers (University of Utah) |
EE/CS 3-180 |
| 12:00p-2:00p |
Lunch |
|
|
| 2:00p-2:40p |
Fundamental limitations on noise reduction in the cell
|
Glenn Vinnicombe (University of Cambridge) |
EE/CS 3-180 |
| 2:50p-3:30p |
Putting a round worm in a square hole
|
Craig P. Hunter (Harvard University) |
EE/CS 3-180 |
| 3:30p-4:00p |
Coffee |
|
EE/CS 3-176 |
| 4:00p-4:40p |
Spontaneous participants' presentations
|
David L. Dill (Stanford University), Jeffery G. Saven (University of Pennsylvania), Eduardo D. Sontag (Rutgers University), Jin Wang (SUNY) |
EE/CS 3-180 |
| 4:40p-5:10p |
Second chances |
|
EE/CS 3-180 |
|
Friday, April 25
|
| 9:00a-9:30a |
Coffee |
|
EE/CS 3-176 |
| 9:30a-10:10a |
Predicting quantitative diversification of multicellular
phenotype
|
Anand R. Asthagiri (California Institute of Technology) |
EE/CS 3-180 |
| 10:20a-11:00a |
Evo-devo and the syntactic and semantic 'design features' of
human language
|
Robert C. Berwick (Massachusetts Institute of Technology) |
EE/CS 3-180 |
| 11:00a-11:20a |
Coffee |
|
EE/CS 3-176 |
| 11:20a-12:00p |
Wrap-up discussion
|
Partha P. Mitra (Cold Spring Harbor Laboratory) |
EE/CS 3-180 |
| Name |
Department |
Affiliation |
| Pranav Agarwal |
Department of Electrical Engineering |
University of Minnesota |
| Tanuj Aggarwal |
Department of Electrical Engineering |
University of Minnesota |
| Claudio Altafini |
Department of Functional Analysis and Applications |
International School for Advanced Studies (SISSA/ISAS) |
| Douglas N. Arnold |
School of Mathematics |
University of Minnesota |
| Anand R. Asthagiri |
Chemistry and Chemical Engineering Department |
California Institute of Technology |
| Bassam Bamieh |
Department of Mechanical Engineering |
University of California, Santa Barbara |
| Sankar Basu |
Department of Engineering |
National Science Foundation |
| Daniel J. Bates |
|
University of Minnesota |
| Banu Baydil |
Department of Mathematical Sciences |
Rensselaer Polytechnic Institute |
| Robert C. Berwick |
Department of Electrical Engineering and Computer Science |
Massachusetts Institute of Technology |
| Prateek Bhansali |
Department of Electrical and Computer Engineering |
University of Minnesota |
| Yermal Sujeet Bhat |
|
University of Minnesota |
| Sudin Bhattacharya |
Computational Biology Department |
The Hamner Institutes for Health Sciences |
| Victor Bloomfield |
Department of Biochemistry |
University of Minnesota |
| Khalid Boushaba |
Department of Mathematics |
Iowa State University |
| Hans C. Breiter MD |
Departments of Radiology and Psychiatry |
Massachusetts General Hospital |
| Maria-Carme T. Calderer |
School of Mathematics |
University of Minnesota |
| Hannah Callender |
Institute for Mathematics and its Applications |
University of Minnesota |
| John R. Cannon |
Mathematics Department |
University of Central Florida |
| James A. Carlson |
|
Clay Mathematics Institute |
| Dmitri Chklovskii |
|
Cold Spring Harbor Laboratory |
| Yung-Sze Choi |
Department of Mathematics |
University of Connecticut |
| Sean P Corum |
Department of Physics |
University of Minnesota |
| Ludovica Cecilia Cotta-Ramusino |
Institute for Mathematics and its Applications |
University of Minnesota |
| Robert Cummins |
Department of Philosophy |
University of Illinois at Urbana-Champaign |
| Debopriya Das |
Life Sciences Division |
Lawrence Berkeley National Laboratory |
| Tim Denison |
Department of Neuromodulation |
Medtronic |
| David L. Dill |
Department of Computer Science |
Stanford University |
| Kequan Ding |
|
Chinese Academy of Sciences |
| John C. Doyle |
Department of Control and Dynamical Systems |
California Institute of Technology |
| Geir Dullerud |
Department of Mechanical Science and Engineering |
University of Illinois at Urbana-Champaign |
| Hana El-Samad |
Department of Biochemistry and Biophysics |
University of California, San Francisco |
| Gurkan Erdogan |
Mechanical Engineering |
University of Minnesota |
| Haitao Fan |
Department of Mathematics |
Georgetown University |
| W. Tecumseh Fitch |
School of Psychology |
University of St. Andrews |
| Christodoulos A. Floudas |
Department of Chemical Engineering |
Princeton University |
| Daniel Forger |
Department of Mathematics |
University of Michigan |
| Melissa K. Gardner |
Biomedical Engineering Department |
University of Minnesota |
| Tryphon T. Georgiou |
Department of Electrical Engineering |
University of Minnesota |
| Jason E. Gower |
|
University of Minnesota |
| Chenjie Gu |
Department of Electrical and Computer Engineering |
University of Minnesota |
| Robert Guy |
Department of Mathematics |
University of California, Davis |
| Esfandiar Haghverdi |
School of Informatics |
Indiana University |
| Milena Hering |
|
University of Minnesota |
| Franziska Babette Hinkelmann |
Department of Mathematics |
Virginia Polytechnic Institute and State University |
| Peter Hinow |
Institute for Mathematics and its Applications |
University of Minnesota |
| Craig P. Hunter |
Department of Molecular and Cellular Biology |
Harvard University |
| Richard D. James |
Department of Aerospace Engineering and Mechanics |
University of Minnesota |
| Imre M. Jánosi |
Department of Physics of Complex Systems |
Eötvös Loránd University (ELTE) |
| Tiefeng Jiang |
Department of Statistics |
University of Minnesota |
| Mihailo Jovanovic |
Department of Electrical and Computer Engineering |
University of Minnesota |
| Mustafa H. Khammash |
Department of Mechanical Engineering |
University of California, Santa Barbara |
| Varunyu Khamviwith |
|
University of Minnesota |
| David Kleinfeld |
Department of Physics |
University of California, San Diego |
| Debra Knisley |
Department of Mathematics |
East Tennessee State University |
| Peter R. Kramer |
Department of Mathematical Sciences |
Rensselaer Polytechnic Institute |
| Juan Latorre |
Department of Mathematical Sciences |
Rensselaer Polytechnic Institute |
| Reinhard Laubenbacher |
Virginia Bioinformatics Institute |
Virginia Polytechnic Institute and State University |
| Anton Leykin |
|
University of Minnesota |
| Patrick D Lincoln |
Computer Science Laboratory |
SRI International |
| Roger Lui |
Department of Mathematical Sciences |
Worcester Polytechnic Institute |
| Laura Lurati |
|
University of Minnesota |
| Oluwole Daniel Makinde |
Department of Applied Mathematics |
University of Limpopo |
| Yi Mao |
Department of Mathematics |
Michigan State University |
| Ezio Marchi |
Department of Mathematics |
Instituto de Matemática Aplicada |
| Curt McNamara |
|
Logic Product Development |
| George Michailidis |
Department of Statistics |
University of Michigan |
| Ezra Miller |
School of Mathematics |
University of Minnesota |
| Partha P. Mitra |
|
Cold Spring Harbor Laboratory |
| Alejandro Morales Valencia |
Department of Computational Sciences |
University of Guadalajara |
| Richard M. Murray |
Department of Control and Dynamical Systems |
California Institute of Technology |
| Chris J. Myers |
Electrical and Computer Engineering Department |
University of Utah |
| Christopher R. Myers |
Cornell Theory Center |
Cornell University |
| Timothy Newman |
Department of Physics |
Arizona State University |
| Duane Nykamp |
School of Mathematics |
University of Minnesota |
| David J. Odde |
Department of Biomedical Engineering |
University of Minnesota |
| Isamu Ohnishi |
Department of Mathematical and Life Sciences |
Hiroshima University |
| Hans G. Othmer |
Department of Mathematics |
University of Minnesota |
| Antonis Papachristodoulou |
Department of Engineering Science |
University of Oxford |
| Donald W. Pfaff |
|
Rockefeller University |
| Bobby Philip |
Computer and Computational Sciences Division |
Los Alamos National Laboratory |
| Eric J. Rawdon |
Department of Mathematics |
University of St. Thomas |
| Jenny Santoso |
Department of Mathematics |
IBM Deutschland GmbH |
| Vishal Saraswat |
School of Mathematics |
University of Minnesota |
| Michael A. Savageau |
Department of Biomedical Engineering, and Microbiology Graduate Group |
University of California, Davis |
| Jeffery G. Saven |
Department of Chemistry |
University of Pennsylvania |
| Deena Schmidt |
|
University of Minnesota |
| Peter H. Schwartz |
|
Indiana University Center for Bioethics and Indiana University School of Medicine |
| Hullas Sehcal |
Department of Electrical Engineering |
University of Minnesota |
| Anirvan Sengupta |
Department of Physics and Astronomy |
Rutgers University |
| Gaukhar Shaikhova |
Department of Mathematics and Information Technology |
The L.N.Gumilyov Eurasian National University |
| Chehrzad Shakiban |
Institute of Mathematics and its Application |
University of Minnesota |
| Lei Shi |
Department of Chemistry |
University of Minnesota |
| Eduardo D. Sontag |
Department of Mathematics |
Rutgers University |
| Andrew M. Stein |
Institute for Mathematics and its Applications |
University of Minnesota |
| De Witt L. Sumners |
Department of Mathematics |
Florida State University |
| Vladimir Sverak |
School of Mathematics |
University of Minnesota |
| Erkan Tüzel |
Institute for Mathematics and its Applications |
University of Minnesota |
| Dan Valente |
|
Cold Spring Harbor Laboratory |
| Glenn Vinnicombe |
Department of Engineering |
University of Cambridge |
| Haibin Wang |
|
Cold Spring Harbor Laboratory |
| Haiyan Wang |
Department of Mathematical Sciences and Applied Computing |
Arizona State University |
| Jin Wang |
Department of Chemistry, Physics and Applied Mathematics |
SUNY |
| Zhian Wang |
IMA |
University of Minnesota |
| Kelly Wei |
Department of Neuromodulation |
Medtronic |
| Hans Weinberger |
School of Mathematics |
University of Minnesota |
| Zhijun Wu |
Department of Mathematics |
Iowa State University |
| Richard Yamada |
Department of Mathematics |
University of Michigan |
| Joung-Hahn Yoon |
|
Seoul National University |
| Hongchao Zhang |
|
University of Minnesota |