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Propelled by the success of the sequencing of the human and many related genomes, molecular and cellular biology promise significant scientific breakthroughs in the near future. Mathematics (broadly defined) is positioned to play a major role in this effort, helping to discover the secrets of life by working collaboratively with bench biologists, chemists and physicists. The critical need, which has already begun, is the development of a quantitative body of theory for biology. This development of theory is expected to have the same impact on biology as it did on the sciences of physics, chemistry and engineering in the 20th century. This quantitative body of theory will be created by people with strong backgrounds in both biology and in the mathematical sciences. Because of its outstanding record of interdisciplinary research and training, the IMA is an ideal venue for this annual program at the interface between the mathematical sciences and biology.
Three major areas of
emphasis |
|
|---|---|
| September-December 2007 | Nucleic Acid Structure and Function |
| January-March 2008 | Protein Structure and Function |
| April-June 2008 | Modeling Cellular Physiology |
Propelled by the success of the sequencing of the human and many related genomes, molecular and cellular biology promise significant scientific breakthroughs in the near future. Mathematics (broadly defined) is positioned to play a major role in this effort, helping to discover the secrets of life by working collaboratively with bench biologists, chemists and physicists. The critical need, which has already begun, is the development of a quantitative body of theory for biology. This development of theory is expected to have the same impact on biology as it did on the sciences of physics, chemistry and engineering in the 20th century. This quantitative body of theory will be created by people with strong backgrounds in both biology and in the mathematical sciences. Because of its outstanding record of interdisciplinary research and training, the IMA is an ideal venue for this annual program at the interface between the mathematical sciences and biology.
This interface has been growing steadily in importance in the last decade, but there is tremendous room for progress. Major advances are needed in mathematical, statistical and computational methods to generate significant impact on the prediction and control of spatio-temporal molecular and cellular behavior. This IMA program starts with nucleic acids, moves on to proteins, and ends with the modeling of cellular physiology. These areas have major interconnectedness, and the program will emphasize these relationships. In the Fall quarter we begin with nucleic acid (DNA and RNA) organization, structure, function, and the interaction between DNA and RNA in the production of proteins and the orchestration of cellular metabolism. In the Winter quarter we study protein structure and function. The new science of proteomics aims to understand how proteins are produced and how they function and malfunction. We need to understand how protein production is controlled, and the cascade of interaction among families of proteins. In the Spring quarter we study the mathematics of cellular physiology, a highly complex biological system, with structures from molecular to macroscopic scale, and processes with critical time scales from nanoseconds to hours. Modeling cellular behavior poses significant challenges to the mathematical sciences.
Progress at the interface will be enabled by developments in mathematics focused on biology at the molecular level. Accurate models of molecular forces appropriate to biological systems will be critically needed. These will have to work well even when (as during protein folding), molecules form, break and remake bonds, a far more difficult and nonlinear situation than found in crystalline substances. New and efficient methods will be needed to model the effect of solvents on important biological reactions. Purely stochastic methods are expected to be important, but, equally importantly, a theory will have to be built that supplies biologically meaningful probability distributions that are input to those methods. In addition, the mathematical models must be amenable to efficient computational algorithms that can analyze realistic biological reactions.
Molecular dynamics is a critical part of almost every quantitative study at the molecular level, and the time scales treatable by accurate MD methods, based on truly accurate molecular forces, are far too short to treat anything but the most simple biological reaction. At a higher but still relatively simple levels, there are simple organized structures in biology, e.g., such things as microtubules, mini-chromosomes, actin filaments, protein motors, viral capsids, membranes, that may be amenable to mesoscale (bridging the gap between microscopic and macroscopic) and macroscopic mathematical models. As emphasized by members of the Biological Advisory Committee it will be important to focus on sufficiently simple (but real) biological systems to maximize the value of the quantitative approach.
| Craig
Benham |
Genome Center | University of California - Davis |
| Richard D. James |
Aerospace Engineering & Mechanics | University of Minnesota | Bud Mishra |
Courant Institute of Mathematical Sciences | New York University |
| Alex Mogilner | Mathematics and Center for Genetics and Development | University of California, Davis |
| Tamar Schlick |
Chemistry and Courant Institute of Mathematical Sciences | New York University |
| De Witt L. Sumners
|
Mathematics | Florida State University |
| Advisory Committee: | ||
|---|---|---|
| Marianne Bronner-Fraser |
Division of Biology | California Institute of Technology |
| Ken A Dill |
Pharmaceutical Chemistry | University of California, San Francisco |
| Jiali Gao |
Chemistry | University of Minnesota |
| Michael Levitt |
Structural Biology | Stanford University School of Medicine |
| Wilma
K. Olson |
Chemistry & Chemical Biology | Rutgers University |
| Name | Department | Affiliation | Period of Visit |
|---|---|---|---|
| Claudio Altafini | Department of Functional Analysis and Applications | International School for Advanced Studies (SISSA/ISAS) | 4/15/08 - 5/15/08 |
| Douglas N. Arnold | School of Mathematics | University of Minnesota | 7/15/01 - 6/30/08 |
| Donald G. Aronson | Institute for Mathematics and its Applications | University of Minnesota | 9/1/02 - 12/31/10 |
| F. Javier Arsuaga | Department of Mathematics | San Francisco State University | 9/3/07 - 12/22/07 |
| Peter W. Bates | Department of Mathematics | Michigan State University | 9/1/07 - 12/22/07 |
| John Baxter | School of Mathematics | University of Minnesota | 8/1/07 - 2/1/08 |
| Banu Baydil | Department of Mathematical Sciences | Rensselaer Polytechnic Institute | 3/1/08 - 6/30/08 |
| Khalid Boushaba | Department of Mathematics | Iowa State University | 1/15/08 - 6/30/08 |
| Dennis Bray | Department of Physiology, Development and Neuroscience | University of Cambridge | 5/1/08 - 5/30/08 |
| Shi-Jie Chen | Department of Physics | University of Missouri | 9/3/07 - 11/3/07 |
| Yung-Sze Choi | Department of Mathematics | University of Connecticut | 4/1/08 - 5/31/08 |
| Isabel K. Darcy | Department of Mathematics | University of Iowa | 9/1/07 - 1/19/08 |
| Kequan Ding | Chinese Academy of Sciences | 4/15/08 - 5/31/08 | |
| Sergei Fedotov | School of Mathematics | University of Manchester | 5/5/08 - 6/4/08 |
| Christodoulos A. Floudas | Department of Chemical Engineering | Princeton University | 4/1/08 - 6/30/08 |
| Robert Guy | Department of Mathematics | University of California, Davis | 3/24/08 - 6/24/08 |
| Esfandiar Haghverdi | School of Informatics | Indiana University | 1/2/08 - 6/30/08 |
| Dirk Hartmann | Ruprecht-Karls-Universität Heidelberg | 5/22/08 - 6/21/08 | |
| Christine E. Heitsch | School of Mathematics | Georgia Institute of Technology | 9/4/07 - 11/3/07 |
| Richard D. James | Department of Aerospace Engineering and Mechanics | University of Minnesota | 9/4/07 - 6/30/08 |
| Imre M. Jánosi | Department of Physics of Complex Systems | Eötvös Loránd University (ELTE) | 2/1/08 - 6/30/08 |
| Tiefeng Jiang | School of Statistics | University of Minnesota | 9/1/07 - 6/30/08 |
| Soojeong Kim | Department of Mathematics | University of Iowa | 8/30/07 - 1/20/08 |
| Debra Knisley | Department of Mathematics | East Tennessee State University | 8/17/07 - 6/1/08 |
| Attila Gyula Kocsis | Structural Mechanics | Budapest University of Technology and Economics | 12/1/07 - 12/26/07 |
| Peter R. Kramer | Department of Mathematical Sciences | Rensselaer Polytechnic Institute | 1/8/08 - 6/30/08 |
| Juan C. Latorre | Rensselaer Polytechnic Institute | 1/10/08 - 6/30/08 | |
| Chang Hyeong Lee | Worcester Polytechnic Institute | 10/14/07 - 1/4/08 | |
| Christopher J. Lee | Department of Chemistry and Biochemistry | University of California, Los Angeles | 1/10/08 - 3/10/08 |
| Roger Lui | Department of Mathematical Sciences | Worcester Polytechnic Institute | 9/1/07 - 6/30/08 |
| Vicenc Mendez | Department of Physics | Autonomous University of Barcelona | 5/1/08 - 5/31/08 |
| Ezra Miller | School of Mathematics | University of Minnesota | 9/1/07 - 6/30/08 |
| Kenneth C. Millett | Department of Mathematics | University of California, Santa Barbara | 9/13/07 - 10/17/07, 1/10/08 - 2/8/08 |
| Maria Giovanna Mora | Department of Mathematics | International School for Advanced Studies (SISSA/ISAS) | 9/1/07 - 12/22/07 |
| Timothy Newman | Arizona State University | 9/1/07 - 7/15/08 | |
| Duane Nykamp | School of Mathematics | University of Minnesota | 9/1/07 - 6/30/08 |
| David J. Odde | Department of Biomedical Engineering | University of Minnesota | 1/9/08 - 6/30/08 |
| Hans G. Othmer | Department of Mathematics | University of Minnesota | 9/1/07 - 6/30/08 |
| Bobby Philip | Department of Mathematical Modeling and Analysis | Los Alamos National Laboratory | 4/16/08 - 5/30/08 |
| Eric J. Rawdon | Department of Mathematics | University of St. Thomas | 1/10/08 - 6/30/08 |
| Sebastian Ambrose Sandersius | Department of Physics | Arizona State University | 5/1/08 - 6/14/08 |
| Jeffery G. Saven | Department of Chemistry | University of Pennsylvania | 3/19/08 - 6/10/08 |
| Brigitte Servatius | Department of Mathematics | Worcester Polytechnic Institute | 1/10/08 - 2/8/08 |
| Chehrzad Shakiban | Institute of Mathematics and its Applications | University of Minnesota | 9/1/06 - 8/31/08 |
| De Witt L. Sumners | Department of Mathematics | Florida State University | 9/5-26/07, 10/24-11/7/07, 1/8-22/08, 2/27-3/12/08, 4/15-4/29/08, 5/21-6/4/08 |
| Vladimir Sverak | School of Mathematics | University of Minnesota | 9/1/07 - 6/30/08 |
| David Swigon | Department of Mathematics | University of Pittsburgh | 9/4/07 - 12/14/07 |
| Mariel Vazquez | Department of Mathematics | San Francisco State University | 9/3/07 - 12/22/07 |
| Annika Wedemeier | Biophysics of Macromolecules Department | German Cancer Research Center | 9/15/07 - 10/12/07 |
| Hans Weinberger | School of Mathematics | University of Minnesota | 2/13/08 - 6/30/08 |
| Zhijun Wu | Department of Mathematics | Iowa State University | 9/4/07 - 6/1/08 |
| Arghir Dani Zarnescu | Mathematical Institute | University of Oxford | 11/12/07 - 12/9/07 |
| First Year IMA Postdocs | ||
|---|---|---|
| Name | Institution | Advisor |
| Callender, Hannah | Vanderbilt University | Mary Ann Horn |
| Cotta-Ramusino, Ludovica | Ecole Polytecnique Federale de Lausanne (EPFL) |
John H. Maddocks |
| Hinow, Peter | Vanderbilt University | Glenn Webb |
| Schmidt, Deena | Cornell University | Richard Durrett |
| Stein, Andrew M. | University of Michigan | Leonard Sander and Trachette Jackson |
| Tüzel, Erkan | University of Minnesota | Daniel Kroll |
| Wang, Zhian | University of Alberta | Kevin Painter |
| Second Year IMA Postdocs | ||
| Name | Institution | Advisor |
| Bates, Daniel J. | University of Notre Dame | Andrew Sommese |
| Gower, Jason E. | University of Cincinnati | Samuel Wagstaff |
| Hering, Milena | University of Michigan | William Fulton |
| Leykin, Anton | University of Illinois - Chicago | Gennady Lyubeznik |
| First Year IMA Industrial Postdoc | |||
|---|---|---|---|
Name |
Institution |
Advisor |
Industrial
Partner |
| Dubois, Olivier | McGill University | Martin Gander | ExxonMobil |
| Second Year IMA Industrial Postdocs | |||
Name |
Institution |
Advisor |
Industrial
Partner |
| Bhat, Yermal Sujeet | University of Florida | Shari Moskow | AFRL |
| Lurati, Laura | Brown University | Jan Hesthaven | Boeing |
| Zhang, Hongchao | University of Florida | William Hager | IBM |
Regular Postdoctoral Fellowships 1982-present
Industrial Postdoctoral Fellowships 1990-present
| 9/15/07 | Tutorial: Mathematics of Nucleic Acids |
| 9/16-21/07 | Workshop: Mathematics of DNA Structure, Function, and Interactions |
| 10/29-11/2/07 | Workshop: RNA in Biology, Bioengineering and Nanotechnology |
| 1/10-11/08 | Tutorial: Mathematics of Proteins |
| 1/14-18/08 | Workshop: Protein Folding |
| 3/3-7/08 | Workshop: Organization of Biological Networks |
| 4/17-18/08 | Tutorial: Network Dynamics and Cell Physiology |
| 4/21-25/08 | Workshop: Design Principles in Biological Systems |
| 5/27-30/08 | Workshop: Quantitative Approaches to Cell Motility and Chemotaxis |
2006-2007 Annual Report: pdf
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