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HOME » PROGRAMS/ACTIVITIES » Annual Thematic Program
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Mathematics, San Francisco State University |
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Mathematics, University of California - Berkeley |
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Mathematics, Harvard University |
Advances in computational algebra in the past few years have led to the use
of algebraic geometry to study problems in biology, dynamics, and
statistics. Some highlights of these new applications include: algebraic
techniques for studying and solving the likelihood equations for discrete
random variables in statistics; Groebner basis techniques to generate
random walks on high dimensional contingency tables and their applications
in disclosure limitation; the use of toric geometry to study the dynamics
of chemical systems; the algebraic tools for producing invariants of Markov
models in phylogeny and their applications in phylogenetic tree recovery;
and the application of tropical geometry for parametric sequence alignment
in genomics.
The focus of this workshop is on these relatively new applications of
algebraic geometry where the full scope of the techniques are still
developing. We hope to bring together a broad range of researchers in both
algebraic geometry and applied science. A key aim is to establish a bridge
between mathematicians wishing to learn more about these applications and
to expose new algebraic tools to researchers in industry and academia.
| Monday | Tuesday | Wednesday | Thursday | Friday | |||
|---|---|---|---|
| Monday March 05, 2007 | |||
| 8:15am-9:00am | Registration and coffee | EE/CS 3-176 | |
| 9:00am-9:15am | Welcome and introduction | Douglas Arnold (University of Minnesota) | EE/CS 3-180 |
| 9:15am-10:05am | Open problems in algebraic statistics | Bernd Sturmfels (University of California, Berkeley) Cancelled | EE/CS 3-180 |
| 10:05am-10:40am | Coffee | EE/CS 3-176 | |
| 10:40am-11:30am | Likelihood ratio tests and singularities | Mathias Drton (University of Chicago) | EE/CS 3-180 |
| 11:30am-1:30pm | Lunch | ||
| 1:30pm-2:20pm | Stability and instability in polynomial equations arising from complex chemical reaction networks: the big picture | Martin Feinberg (Ohio State University) | EE/CS 3-180 |
| 2:20pm-2:50pm | Coffee | EE/CS 3-176 | |
| 2:50pm-3:40pm | Stability and instability in polynomial equations arising from complex chemical reaction networks: some underlying mathematics | Gheorghe Craciun (University of Wisconsin-Madison) | EE/CS 3-180 |
| 3:40pm-4:10pm | Second Chances | EE/CS 3-180 | |
| 4:10pm-4:30pm | Group Photos | EE/CS 3-180 | |
| 4:30pm-6:30pm | Lind Hall 400 | ||
| Tuesday March 06, 2007 | |||
| 8:30am-9:00am | Coffee | EE/CS 3-176 | |
| 9:00am-9:50am | Phylogenetic models: algebra and evolution | Elizabeth Allman (University of Alaska) | EE/CS 3-180 |
| 9:50am-10:30am | Coffee | EE/CS 3-176 | |
| 10:30am-11:20am | Generalized maximum likelihood estimates for exponential families | František Matúš (Czech Academy of Sciences (AVČR)) | EE/CS 3-180 |
| 11:20am-1:30pm | Lunch | ||
| 1:30pm-2:20pm | Bifurcations in coupled systems | Martin Golubitsky (University of Houston) | EE/CS 3-180 |
| 2:20pm-3:00pm | Coffee | EE/CS 3-176 | |
| 3:00pm-3:50pm | Application of algebraic statistics for statistical disclosure limitation | Aleksandra Slavković (Pennsylvania State University) | EE/CS 3-180 |
| 4:00pm-4:30pm | Second Chances | EE/CS 3-180 | |
| Wednesday March 07, 2007 | |||
| 8:30am-9:00am | Coffee | EE/CS 3-176 | |
| 9:00am-9:50am | Polynomial dynamical systems over finite fields, with applications to modeling and simulation of biological networks | Reinhard Laubenbacher (Virginia Polytechnic Institute and State University) | EE/CS 3-180 |
| 9:50am-10:30am | Coffee | ||
| 10:30am-11:20am | Gene interactions and the geometry of fitness landscapes | Niko Beerenwinkel (Harvard University) | EE/CS 3-180 |
| 11:30am-12:00pm | Second Chances | EE/CS 3-180 | |
| 5:00pm-6:30pm | Reception | Lind Hall 400 | |
| 7:00pm-8:00pm | Math Matters - IMA Public Lecture: Patterns Patterns Everywhere | Martin Golubitsky (University of Houston) | Willey Hall 125 |
| Thursday March 08, 2007 | |||
| 8:30am-9:00am | Coffee | EE/CS 3-176 | |
| 9:00am-9:50am | Gaussian path diagrams | Thomas Richardson (University of Washington) | EE/CS 3-180 |
| 9:50am-10:30am | Coffee | ||
| 10:30am-11:20am | Using algebraic geometry for phylogenetic reconstruction | Marta Casanellas (Polytechnical University of Cataluña (Barcelona)) | EE/CS 3-180 |
| 11:20am-1:30pm | Lunch | ||
| 1:30pm-2:20pm | Modelling with mass-action kinetics and beyond | Markus Kirkilionis (University of Warwick) | EE/CS 3-180 |
| 2:20pm-3:00pm | Coffee | EE/CS 3-176 | |
| 3:00pm-3:50pm | Information geometry and algebraic statistics | Giovanni Pistone (Politecnico di Torino) | EE/CS 3-180 |
| 4:00pm-4:30pm | Second Chances | ||
| 6:30pm-8:00pm | Dinner: Caspian Bistro Restaurant | 2418 University Ave SE 612-623-1133 | |
| Friday March 09, 2007 | |||
| 8:30am-9:00am | Coffee | EE/CS 3-176 | |
| 9:00am-9:50am | On phylogenetic trees – a geometer's view | Jaroslaw Wisniewski (University of Warsaw) | EE/CS 3-180 |
| 9:50am-10:30am | Coffee | ||
| 10:30am-11:20am | A combinatorial test for significant codivergence between cool-season grasses and their symbiotic fungal endophytes | Ruriko Yoshida (University of Kentucky) | EE/CS 3-180 |
| 11:20am-1:30pm | Lunch | ||
| 1:30pm-2:20pm | Subspace arrangements in theory and practice | Robert Fossum (University of Illinois at Urbana-Champaign) | EE/CS 3-180 |
| 2:20pm-3:00pm | Coffee | EE/CS 3-176 | |
| 3:00pm-3:50pm | Algebraic statistics and the analysis of contingency tables: Old wine in new bottles? | Stephen Fienberg (Carnegie Mellon University) | EE/CS 3-180 |
| 4:00pm-4:30pm | Second Chances and closing remarks. | ||
| NAME | DEPARTMENT | AFFILIATION |
|---|---|---|
| Elizabeth Allman | Department of Mathematics & Statistics | University of Alaska |
| Douglas Arnold | Institute for Mathematics and its Applications | University of Minnesota |
| Donald Aronson | Institute for Mathematics and its Applications | University of Minnesota |
| Hélène Barcelo | Department of Mathematics & Statistics | Arizona State University |
| Brandon Barker | University of Kentucky | |
| Daniel Bates | Institute for Mathematics and its Applications | University of Minnesota |
| Niko Beerenwinkel | Program for Evolutionary Dynamics | Harvard University |
| Jeremy Bellay | School of Mathematics | University of Minnesota |
| Wicher Bergsma | London School of Economics and Political Science | |
| Víctor Blanco Izquierdo | Department of Statistics and Operations Research | University of Sevilla |
| Cristiano Bocci | Department of Mathematics | Università di Milano |
| Tristram Bogart | Department of Mathematics | University of Washington |
| Joseph Brennan | Department of Mathematics | University of Central Florida |
| Marta Casanellas | Departamento de Matematica Aplicada | Polytechnical University of Cataluña (Barcelona) |
| Hegang Chen | School of Medicine, Division of Biostatistics and Bioinformatics | University of Maryland at Baltimore |
| Vera Cherepinsky | Department of Mathematics and Computer Science | Fairfield University |
| Ionut Ciocan-Fontanine | Institute for Mathematics and its Applications | University of Minnesota |
| Barry Cipra | NONE | |
| Eduardo Corel | Laboratoire Statistique et Génome | Centre National de la Recherche Scientifique (CNRS) |
| Gheorghe Craciun | Department of Mathematics and Department of Biomolecular Chemistry | University of Wisconsin-Madison |
| Alicia Dickenstein | Departamento de Matemática, FCEN | University of Buenos Aires |
| Kequan Ding | Science100 Labs | Chinese Academy of Sciences |
| Jianping Dong | Department of Mathematical Sciences | Michigan Technological University |
| Kenneth Driessel | Department of Mathematics | Iowa State University |
| Mathias Drton | Department of Statistics | University of Chicago |
| Vanja Dukic | Department of Health Studies (Biostatistics) | University of Chicago |
| Ryan Elliott | Department of Aerospace Engineering and Mechanics | University of Michigan |
| Nicholas Eriksson | Department of Statistics | Stanford University |
| Makan Fardad | Department of Electrical and Computer Engineering | University of Minnesota |
| Martin Feinberg | Department of Chemical and Biomolecular Engineering | Ohio State University |
| David Fernández-Baca | Department of Computer Science | Iowa State University |
| Stephen Fienberg | Department of Statistics | Carnegie Mellon University |
| Robert Fossum | Department of Mathematics | University of Illinois at Urbana-Champaign |
| Surya Ganguli | Sloan Center for Theoretical Neurobiology | University of San Francisco |
| Martin Golubitsky | Department of Mathematics | University of Houston |
| Jason Gower | Institute for Mathematics and its Applications | University of Minnesota |
| Mansoor Haider | Department of Mathematics | North Carolina State University |
| Michael Hardy | School of Mathematics | University of Minnesota |
| Gloria Haro Ortega | Institute for Mathematics and its Applications | University of Minnesota |
| Christine Heitsch | School of Mathematics | Georgia Institute of Technology |
| J. William Helton | Department of Mathematics | University of California, San Diego |
| Milena Hering | Institute for Mathematics and its Applications | University of Minnesota |
| Patricia Hersh | Department of Mathematics | Indiana University |
| Benjamin Howard | Institute for Mathematics and its Applications | University of Minnesota |
| Evelyne Hubert | Project Team GALAAD | Institut National de Recherche en Informatique Automatique (INRIA) |
| Peter Huggins | Department of Mathematics | University of California, Berkeley |
| Satish Iyengar | Department of Statistics | University of Pittsburgh |
| Farhad Jafari | Department of Mathematics | University of Wyoming |
| Abdul Jarrah | Virginia Bioinformatics Institute | Virginia Polytechnic Institute and State University |
| Anders Jensen | Institut for Matematiske Fag | Aarhus University |
| Renfang Jiang | Department of Mathematical Sciences | Michigan Technological University |
| Ben Jordan | Department of Mathematics | University of Minnesota |
| Steve Kaliszewski | Department of Mathematics & Statistics | Arizona State University |
| Mordechai Katzman | Department of Pure Mathematics | University of Sheffield |
| Michael Kerber | Department of Mathematics | Universität Kaiserslautern |
| Markus Kirkilionis | Department of Mathematics | University of Warwick |
| Elizabeth Kleiman | Department of Mathematics | Iowa State University |
| Song-Hwa Kwon | Institute for Mathematics and its Applications | University of Minnesota |
| Batool Labibi | Department of Electrical and Computer Engineering | University of Alberta |
| Reinhard Laubenbacher | Virginia Bioinformatics Institute | Virginia Polytechnic Institute and State University |
| Niels Lauritzen | Department of Mathematical Sciences | Aarhus University |
| Reiner Lauterbach | Fachbereich Mathematik | Universität Hamburg |
| Juyoun Lee | Department of Statistics | Pennsylvania State University |
| Namyong Lee | Department of Mathematics | Minnesota State University |
| Anton Leykin | Institute for Mathematics and its Applications | University of Minnesota |
| Hstau Liao | Institute for Mathematics and its Applications | University of Minnesota |
| Gennady Lyubeznik | School of Mathematics | University of Minnesota |
| James Madden | Department of Mathematics | Louisiana State University |
| Thomas Markwig | Department of Mathematics | Universität Kaiserslautern |
| František Matúš | Institute of Information Theory and Automation | Czech Academy of Sciences (AVČR) |
| Richard Moeckel | School of Mathematics | University of Minnesota |
| Jason Morton | Department of Mathematics | University of California, Berkeley |
| Anca Mustata | Department of Mathematics | University of Illinois at Urbana-Champaign |
| Uwe Nagel | Department of Mathematics | University of Kentucky |
| Yuval Nardi | Department of Statistics | Carnegie Mellon University |
| Jiawang Nie | Institute of Mathematics and its Application | University of Minnesota |
| Ignacio Ojeda Martinez de Castilla | Departamento de Matemáticas | University of Extremadura |
| Sarah Olson | Department of Biomathematical Sciences | North Carolina State University |
| Michael O'Sullivan | Department of Mathematics & Statistics | San Diego State University |
| Lior Pachter | Department of Mathematics | University of California, Berkeley |
| Casian Pantea | University of Wisconsin-Madison | |
| Sonja Petrović | Department of Mathematics | University of Kentucky |
| Giovanni Pistone | Dipartimento di Matematica | Politecnico di Torino |
| Mihai Putinar | Department of Mathematics | University of California, Santa Barbara |
| Kristian Ranestad | Matematisk institutt | University of Oslo |
| Victor Reiner | School of Mathematics | University of Minnesota |
| John Rhodes | Department of Mathematics & Statistics | University of Alaska |
| Eva Riccomagno | Dipartimento di Matematica | Università di Genova |
| Donald Richards | Department of Statistics | Pennsylvania State University |
| Thomas Richardson | Department of Statistics | University of Washington |
| Alessandro Rinaldo | Department of Statistics | Carnegie Mellon University |
| Joel Roberts | School of Mathematics | University of Minnesota |
| Daniel Robertz | Lehrstuhl B fur Mathematik | RWTH Aachen |
| Marie Rognes | University of Oslo | |
| Bjarke Roune | Department of Computer Science | Aarhus University |
| Arnd Scheel | Institute for Mathematics and its Applications | University of Minnesota |
| Chehrzad Shakiban | Institute of Mathematics and its Applications | University of Minnesota |
| Anne Shiu | Department of Mathematics | University of California, Berkeley |
| Aleksandra Slavković | Department of Statistics | Pennsylvania State University |
| Jim Smith | Department of Statistics | University of Warwick |
| Frank Sottile | Department of Mathematics | Texas A & M University |
| Steven Sperber | School of Mathematics | University of Minnesota |
| David Speyer | Department of Mathematics | University of Michigan |
| Sundararajan Srinivasan | Department of Electrical and Computer Engineering | Mississippi State University |
| Dumitru Stamate | School of Mathematics | University of Minnesota |
| Russell Steele | Department of Mathematics & Statistics | McGill University |
| Brandilyn Stigler | Mathematical Biosciences Institute | Ohio State University |
| Michael Stillman | Department of Mathematics | Cornell University |
| Bernd Sturmfels | Department of Mathematics | University of California, Berkeley |
| Seth Sullivant | Department of Mathematics | Harvard University |
| Rebecca Swanson | Department of Mathematics | Indiana University |
| Berhanu Tameru | Center for Computational Epidemiology, Bioinformatics & Risk Analysis (CCEBRA) | Tuskegee University |
| Amelia Taylor | Colorado College | |
| Glenn Tesler | Department of Mathematics | University of California, San Diego |
| Thorsten Theobald | Department of Computer Science and Mathematics | Johann Wolfgang Goethe-Universität Frankfurt |
| Rekha Thomas | Department of Mathematics | University of Washington |
| Carl Toews | Institute for Mathematics and its Applications | University of Minnesota |
| Ya-lun Tsai | Department of Mathematics | University of Minnesota |
| Caroline Uhler | Department of Mathematics | Universität Zürich |
| Jose Vargas | CIIDIR-Oaxaca | Instituto Politecnico Nacional, Mexico |
| Martha Vera-Licona | Virginia Bioinformatics Institute | Virginia Polytechnic Institute and State University |
| Alberto Vigneron-Tenorio | Facultad de Ciencias Sociales y de la Comunicacion | University of Cádiz |
| John Voight | University of Minnesota | |
| Jaroslaw Wisniewski | Department of Mathematics | University of Warsaw |
| Matthias Wolfrum | Weierstraß-Institut für Angewandte Analysis und Stochastik (WIAS) | |
| Seongho Wu | University of Minnesota | |
| Alexander Yong | University of Minnesota | |
| Ruriko Yoshida | Department of Statistics | University of Kentucky |
| Josephine Yu | Department of Mathematics | University of California, Berkeley |
| Cornelia Yuen | Department of Mathematics | University of Kentucky |
| Debbie Yuster | Department of Mathematics | Columbia University |
| Hongchao Zhang | Institute for Mathematics and its Applications | University of Minnesota |
| Mengyuan Zhao | Department of Statistics | University of Pittsburgh |
| Yi Zhou | Department of Machine Learning | Carnegie Mellon University |
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